G880117


Basic Information

Item Value
gene id G880117
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33371139 ~ 33371500 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1001531
AGTATGGGCTGGAATTGCTAACATGTCAATCTCACATAACATTAAGGGCCTTCTTAATTAAGCCACTCAATATAGAAATGGAGATGGGGGGATTGCCTTGGATGTAAGATGATGACATCAGATGAAAGCTTACACACTACCTGtctgtgtacatactgtagatactgtaaatTCCATCATGATTCGTCACCAGCCAATTAGGAAACTGAGTGCATTCTTGCAATTAGGTCATtgcagcaagccatgacacccaccacctcagattgttctgaaaatcgtttctgtagttagaaagaGATAATATTATTTTCTTTAAATTCAATGTGATCTCTGAGAAGTTAATTGATTGCACAGAAATGGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1001531 True 362 lncRNA 0.38 1 33371139 33371500

Neighbor

gene id symbol gene type direction distance location
LOC110533672 LOC106603547 coding upstream 230928 33130843 ~ 33140211 (+)
LOC110534913 LOC106603425 coding upstream 307956 33061411 ~ 33063183 (+)
LOC110533671 LOC106603546 coding upstream 330125 32981866 ~ 33045499 (+)
LOC110533664 LOC106603537 coding upstream 591207 32639570 ~ 32779932 (+)
LOC110533663 LOC106603538 coding upstream 736044 32599894 ~ 32635095 (+)
samsn1b LOC106603553 coding downstream 96864 33468364 ~ 33492333 (+)
serpinh1a serph coding downstream 181808 33553308 ~ 33557914 (+)
LOC110533682 NA coding downstream 196937 33568437 ~ 33569230 (+)
acer3 LOC106603557 coding downstream 203909 33575409 ~ 33593092 (+)
LOC100136017 mmp13 coding downstream 244884 33616384 ~ 33621122 (+)
G880116 NA non-coding upstream 810 33369872 ~ 33370329 (+)
G880114 NA non-coding upstream 3749 33366964 ~ 33367390 (+)
G880113 NA non-coding upstream 4239 33366549 ~ 33366900 (+)
G880111 NA non-coding upstream 5906 33364891 ~ 33365233 (+)
G880110 NA non-coding upstream 6265 33364667 ~ 33364874 (+)
G880119 NA non-coding downstream 868 33372368 ~ 33372593 (+)
G880120 NA non-coding downstream 2082 33373582 ~ 33373808 (+)
G880121 NA non-coding downstream 3626 33375126 ~ 33375357 (+)
G880123 NA non-coding downstream 6674 33378174 ~ 33378566 (+)
G880125 NA non-coding downstream 8799 33380299 ~ 33380810 (+)
G880069 NA other upstream 69401 33300765 ~ 33301738 (+)
LOC110534883 med13 other upstream 2048539 31241426 ~ 31382578 (+)
G877809 NA other upstream 2165721 31205083 ~ 31205418 (+)
LOC110533688 NA other downstream 672994 34044472 ~ 34047724 (+)
hsd20b2 LOC106603577 other downstream 1063042 34422538 ~ 34435620 (+)
LOC110533705 LOC106603578 other downstream 1065840 34437126 ~ 34443357 (+)
rnasekb rnasek other downstream 1087294 34458769 ~ 34472268 (+)
LOC110534915 rps17 other downstream 1115320 34486712 ~ 34488757 (+)

Expression


Co-expression Network