G880119


Basic Information

Item Value
gene id G880119
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33372368 ~ 33372593 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1001533
ggactggcaaaaagtgctcttcactgacgagtcagtGGTTTCGCgtgattcgcgtttatcgtcgaaggaatgagcgttacaccgaaccctgtactctgaagcgggacTGATtttgaggtggagggtctgtcatggtctggggcggtgtgtcacagcatcatcggactgagcttgtcattccaggcaatctcaacgctgtgcgttacagggaagacatcctcctccc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1001533 True 226 lncRNA 0.54 1 33372368 33372593

Neighbor

gene id symbol gene type direction distance location
LOC110533672 LOC106603547 coding upstream 232157 33130843 ~ 33140211 (+)
LOC110534913 LOC106603425 coding upstream 309185 33061411 ~ 33063183 (+)
LOC110533671 LOC106603546 coding upstream 331354 32981866 ~ 33045499 (+)
LOC110533664 LOC106603537 coding upstream 592436 32639570 ~ 32779932 (+)
LOC110533663 LOC106603538 coding upstream 737273 32599894 ~ 32635095 (+)
samsn1b LOC106603553 coding downstream 95771 33468364 ~ 33492333 (+)
serpinh1a serph coding downstream 180715 33553308 ~ 33557914 (+)
LOC110533682 NA coding downstream 195844 33568437 ~ 33569230 (+)
acer3 LOC106603557 coding downstream 202816 33575409 ~ 33593092 (+)
LOC100136017 mmp13 coding downstream 243791 33616384 ~ 33621122 (+)
G880117 NA non-coding upstream 868 33371139 ~ 33371500 (+)
G880116 NA non-coding upstream 2039 33369872 ~ 33370329 (+)
G880114 NA non-coding upstream 4978 33366964 ~ 33367390 (+)
G880113 NA non-coding upstream 5468 33366549 ~ 33366900 (+)
G880111 NA non-coding upstream 7135 33364891 ~ 33365233 (+)
G880120 NA non-coding downstream 989 33373582 ~ 33373808 (+)
G880121 NA non-coding downstream 2533 33375126 ~ 33375357 (+)
G880123 NA non-coding downstream 5581 33378174 ~ 33378566 (+)
G880125 NA non-coding downstream 7706 33380299 ~ 33380810 (+)
G880126 NA non-coding downstream 8970 33381563 ~ 33382062 (+)
G880069 NA other upstream 70630 33300765 ~ 33301738 (+)
LOC110534883 med13 other upstream 2049768 31241426 ~ 31382578 (+)
G877809 NA other upstream 2166950 31205083 ~ 31205418 (+)
LOC110533688 NA other downstream 671901 34044472 ~ 34047724 (+)
hsd20b2 LOC106603577 other downstream 1061949 34422538 ~ 34435620 (+)
LOC110533705 LOC106603578 other downstream 1064747 34437126 ~ 34443357 (+)
rnasekb rnasek other downstream 1086201 34458769 ~ 34472268 (+)
LOC110534915 rps17 other downstream 1114227 34486712 ~ 34488757 (+)

Expression


Co-expression Network