G880126


Basic Information

Item Value
gene id G880126
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33381563 ~ 33382062 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1001540
TCTATGACAGGGACTTCGAAGACAGTGAATGTGataaactgtaactaggccattcaggagcattcaatgtcatcttattaagcaacttcagtgtatatatggccttgtgctttaggttaaaaaaaactccctagtccttgcctatgacaagcatacccataacatgatgcagccatcaccatgcttgaaaatatgaagagtggtactccgtgatgtgttgtgttggatttacctcaaacataatgctttgtattcaggacataaagttaatttctttgccaaattTTACATTACTGccttttgcaaacaggatgcatgctttggaatatttgtattctgtacaggctttcttcttttcacgctgtcagttaggttagtactgtggagtaactacaatgttgttagtccattgggtggcaggtagactagtggttagagcgttgggacagtaaccaaaaGAGTACTGGAtcatatccctgagctgacaagctaaaaatctg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1001540 True 500 lncRNA 0.39 1 33381563 33382062

Neighbor

gene id symbol gene type direction distance location
LOC110533672 LOC106603547 coding upstream 241352 33130843 ~ 33140211 (+)
LOC110534913 LOC106603425 coding upstream 318380 33061411 ~ 33063183 (+)
LOC110533671 LOC106603546 coding upstream 340549 32981866 ~ 33045499 (+)
LOC110533664 LOC106603537 coding upstream 601631 32639570 ~ 32779932 (+)
LOC110533663 LOC106603538 coding upstream 746468 32599894 ~ 32635095 (+)
samsn1b LOC106603553 coding downstream 86302 33468364 ~ 33492333 (+)
serpinh1a serph coding downstream 171246 33553308 ~ 33557914 (+)
LOC110533682 NA coding downstream 186375 33568437 ~ 33569230 (+)
acer3 LOC106603557 coding downstream 193347 33575409 ~ 33593092 (+)
LOC100136017 mmp13 coding downstream 234322 33616384 ~ 33621122 (+)
G880125 NA non-coding upstream 753 33380299 ~ 33380810 (+)
G880123 NA non-coding upstream 2997 33378174 ~ 33378566 (+)
G880121 NA non-coding upstream 6206 33375126 ~ 33375357 (+)
G880120 NA non-coding upstream 7755 33373582 ~ 33373808 (+)
G880119 NA non-coding upstream 8970 33372368 ~ 33372593 (+)
G880127 NA non-coding downstream 658 33382720 ~ 33382921 (+)
G880128 NA non-coding downstream 1046 33383108 ~ 33383425 (+)
G880131 NA non-coding downstream 3248 33385310 ~ 33385687 (+)
G880134 NA non-coding downstream 7900 33389962 ~ 33390459 (+)
G880136 NA non-coding downstream 10560 33392622 ~ 33393105 (+)
G880069 NA other upstream 79825 33300765 ~ 33301738 (+)
LOC110534883 med13 other upstream 2058963 31241426 ~ 31382578 (+)
G877809 NA other upstream 2176145 31205083 ~ 31205418 (+)
LOC110533688 NA other downstream 662432 34044472 ~ 34047724 (+)
hsd20b2 LOC106603577 other downstream 1052480 34422538 ~ 34435620 (+)
LOC110533705 LOC106603578 other downstream 1055278 34437126 ~ 34443357 (+)
rnasekb rnasek other downstream 1076732 34458769 ~ 34472268 (+)
LOC110534915 rps17 other downstream 1104758 34486712 ~ 34488757 (+)

Expression


Co-expression Network