G880128


Basic Information

Item Value
gene id G880128
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33383108 ~ 33383425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1001542
gttttggaggcatttctaaacatggcgccaatgtaaactgaggtttttcgatataaatatgaacttgattgaacaaaacatacatgtattgtgtaacattgagtcctgggagtgtcatctgatgaagatcgtcaaaggttagtgattaatttgatctatatttctgctttttgtgacacctctctttggttggaaaatggctggatgctttctgtgactagttgctgacctaacataatgatatgttctgctttcgccaaaaagcatttttgaaatcggacactgtggttggattaacaagaagtgtatctttaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1001542 True 318 lncRNA 0.36 1 33383108 33383425

Neighbor

gene id symbol gene type direction distance location
LOC110533672 LOC106603547 coding upstream 242897 33130843 ~ 33140211 (+)
LOC110534913 LOC106603425 coding upstream 319925 33061411 ~ 33063183 (+)
LOC110533671 LOC106603546 coding upstream 342094 32981866 ~ 33045499 (+)
LOC110533664 LOC106603537 coding upstream 603176 32639570 ~ 32779932 (+)
LOC110533663 LOC106603538 coding upstream 748013 32599894 ~ 32635095 (+)
samsn1b LOC106603553 coding downstream 84939 33468364 ~ 33492333 (+)
serpinh1a serph coding downstream 169883 33553308 ~ 33557914 (+)
LOC110533682 NA coding downstream 185012 33568437 ~ 33569230 (+)
acer3 LOC106603557 coding downstream 191984 33575409 ~ 33593092 (+)
LOC100136017 mmp13 coding downstream 232959 33616384 ~ 33621122 (+)
G880127 NA non-coding upstream 187 33382720 ~ 33382921 (+)
G880126 NA non-coding upstream 1046 33381563 ~ 33382062 (+)
G880125 NA non-coding upstream 2298 33380299 ~ 33380810 (+)
G880123 NA non-coding upstream 4542 33378174 ~ 33378566 (+)
G880121 NA non-coding upstream 7751 33375126 ~ 33375357 (+)
G880131 NA non-coding downstream 1885 33385310 ~ 33385687 (+)
G880134 NA non-coding downstream 6537 33389962 ~ 33390459 (+)
G880136 NA non-coding downstream 9197 33392622 ~ 33393105 (+)
G880140 NA non-coding downstream 15398 33398823 ~ 33399050 (+)
G880147 NA non-coding downstream 23779 33407204 ~ 33407459 (+)
G880069 NA other upstream 81370 33300765 ~ 33301738 (+)
LOC110534883 med13 other upstream 2060508 31241426 ~ 31382578 (+)
G877809 NA other upstream 2177690 31205083 ~ 31205418 (+)
LOC110533688 NA other downstream 661069 34044472 ~ 34047724 (+)
hsd20b2 LOC106603577 other downstream 1051117 34422538 ~ 34435620 (+)
LOC110533705 LOC106603578 other downstream 1053915 34437126 ~ 34443357 (+)
rnasekb rnasek other downstream 1075369 34458769 ~ 34472268 (+)
LOC110534915 rps17 other downstream 1103395 34486712 ~ 34488757 (+)

Expression


Co-expression Network