G880131


Basic Information

Item Value
gene id G880131
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33385310 ~ 33385687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1001545
GAAAAATGTAACtcattgattgcacccaaattggccattttaatttattaGATTTGTATAATATTAAATCAATATAATACCCAACGTCCAAATTTGAACCAAATCTCTTCTTAACAATGTTTAAGATACAAATAAAATGGTCAAAGGTTTTTCTGAGAAATTAACCATTGGAGTCGCTTGTCCCCCATAAATGAATGTGAAAGTACCAGGTTTTGCCCACTAGATGCACTGTTCCCTCTATTGCCACACACTGTTCCCTCTATTGCCACACACTGTTCCCTCTATTGCCACACACTGTTCCCTCTATTGCCACACACTGTTCCCTCTATTGCCACACACTGTTCCCTCTATTGCCACACACTGTTCCCTCTATTGCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1001545 True 378 lncRNA 0.39 1 33385310 33385687

Neighbor

gene id symbol gene type direction distance location
LOC110533672 LOC106603547 coding upstream 245099 33130843 ~ 33140211 (+)
LOC110534913 LOC106603425 coding upstream 322127 33061411 ~ 33063183 (+)
LOC110533671 LOC106603546 coding upstream 344296 32981866 ~ 33045499 (+)
LOC110533664 LOC106603537 coding upstream 605378 32639570 ~ 32779932 (+)
LOC110533663 LOC106603538 coding upstream 750215 32599894 ~ 32635095 (+)
samsn1b LOC106603553 coding downstream 82677 33468364 ~ 33492333 (+)
serpinh1a serph coding downstream 167621 33553308 ~ 33557914 (+)
LOC110533682 NA coding downstream 182750 33568437 ~ 33569230 (+)
acer3 LOC106603557 coding downstream 189722 33575409 ~ 33593092 (+)
LOC100136017 mmp13 coding downstream 230697 33616384 ~ 33621122 (+)
G880128 NA non-coding upstream 1885 33383108 ~ 33383425 (+)
G880127 NA non-coding upstream 2389 33382720 ~ 33382921 (+)
G880126 NA non-coding upstream 3248 33381563 ~ 33382062 (+)
G880125 NA non-coding upstream 4500 33380299 ~ 33380810 (+)
G880123 NA non-coding upstream 6744 33378174 ~ 33378566 (+)
G880134 NA non-coding downstream 4275 33389962 ~ 33390459 (+)
G880136 NA non-coding downstream 6935 33392622 ~ 33393105 (+)
G880140 NA non-coding downstream 13136 33398823 ~ 33399050 (+)
G880147 NA non-coding downstream 21517 33407204 ~ 33407459 (+)
G880148 NA non-coding downstream 23873 33409560 ~ 33409817 (+)
G880069 NA other upstream 83572 33300765 ~ 33301738 (+)
LOC110534883 med13 other upstream 2062710 31241426 ~ 31382578 (+)
G877809 NA other upstream 2179892 31205083 ~ 31205418 (+)
LOC110533688 NA other downstream 658807 34044472 ~ 34047724 (+)
hsd20b2 LOC106603577 other downstream 1048855 34422538 ~ 34435620 (+)
LOC110533705 LOC106603578 other downstream 1051653 34437126 ~ 34443357 (+)
rnasekb rnasek other downstream 1073107 34458769 ~ 34472268 (+)
LOC110534915 rps17 other downstream 1101133 34486712 ~ 34488757 (+)

Expression


Co-expression Network