G880134


Basic Information

Item Value
gene id G880134
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33389962 ~ 33390459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1001548
CTCCACAGCACAGCCACCCGCACAAGGTGCCCTGTTGCCTGGCAACAGCTCGCCTCATCACTAAAATCCCCAAATCTCCCAAAAGTTATACAATTACAGTTGGTGGTGTGGAGGTGTTGGGGAGTACAGTACATAATAGGGATCGGGTTATTGTTTCTACAGCACTAAAAGGATAAAGGATGTGTGTCTAAAACaagcagtgagtgagtgagtgactgactgaatggggaaATCCCAGCTAGCAGATCCTACtaccacaaacagacacacagtcactgtGATGTCATCAGGATCCTGCTCCATTTGTATTTGGCCCAAGCTCTGTTTTTCCACTCCCTTGGAAAGCCATATGACTCAGATTTCAGTCTGCCCATAGATTAAGACAACAGGGTGTGAGTCTGTGTACGTGTGAGCGTGTGTTAACATGAACGATAATCAAAATATTGACCGCCACACTGTGCACTATGAACTCTCTGGTCGGTGCTCCTGGTCTTGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1001548 True 498 lncRNA 0.47 1 33389962 33390459

Neighbor

gene id symbol gene type direction distance location
LOC110533672 LOC106603547 coding upstream 249751 33130843 ~ 33140211 (+)
LOC110534913 LOC106603425 coding upstream 326779 33061411 ~ 33063183 (+)
LOC110533671 LOC106603546 coding upstream 348948 32981866 ~ 33045499 (+)
LOC110533664 LOC106603537 coding upstream 610030 32639570 ~ 32779932 (+)
LOC110533663 LOC106603538 coding upstream 754867 32599894 ~ 32635095 (+)
samsn1b LOC106603553 coding downstream 77905 33468364 ~ 33492333 (+)
serpinh1a serph coding downstream 162849 33553308 ~ 33557914 (+)
LOC110533682 NA coding downstream 177978 33568437 ~ 33569230 (+)
acer3 LOC106603557 coding downstream 184950 33575409 ~ 33593092 (+)
LOC100136017 mmp13 coding downstream 225925 33616384 ~ 33621122 (+)
G880131 NA non-coding upstream 4275 33385310 ~ 33385687 (+)
G880128 NA non-coding upstream 6537 33383108 ~ 33383425 (+)
G880127 NA non-coding upstream 7041 33382720 ~ 33382921 (+)
G880126 NA non-coding upstream 7900 33381563 ~ 33382062 (+)
G880125 NA non-coding upstream 9152 33380299 ~ 33380810 (+)
G880136 NA non-coding downstream 2163 33392622 ~ 33393105 (+)
G880140 NA non-coding downstream 8364 33398823 ~ 33399050 (+)
G880147 NA non-coding downstream 16745 33407204 ~ 33407459 (+)
G880148 NA non-coding downstream 19101 33409560 ~ 33409817 (+)
G880151 NA non-coding downstream 22868 33413327 ~ 33413603 (+)
G880069 NA other upstream 88224 33300765 ~ 33301738 (+)
LOC110534883 med13 other upstream 2067362 31241426 ~ 31382578 (+)
G877809 NA other upstream 2184544 31205083 ~ 31205418 (+)
LOC110533688 NA other downstream 654035 34044472 ~ 34047724 (+)
hsd20b2 LOC106603577 other downstream 1044083 34422538 ~ 34435620 (+)
LOC110533705 LOC106603578 other downstream 1046881 34437126 ~ 34443357 (+)
rnasekb rnasek other downstream 1068335 34458769 ~ 34472268 (+)
LOC110534915 rps17 other downstream 1096361 34486712 ~ 34488757 (+)

Expression


Co-expression Network