G880148


Basic Information

Item Value
gene id G880148
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33409560 ~ 33409817 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1001562
gctgttttcaactctctagagacagcaggagcagtagagatactcttaatgattggctatgaaaagctaactgacatttactcctgaggtgctgacttgttgaacccttgacaactactgtgattattacagccagaagaggactggccacccctcatagcctggttcctctctagttttcttcctaggttttggcctttctagggagattttcctagccacagtgcttctacacctgcattgcttgctgtttggggt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1001562 True 258 lncRNA 0.46 1 33409560 33409817

Neighbor

gene id symbol gene type direction distance location
LOC110533672 LOC106603547 coding upstream 269349 33130843 ~ 33140211 (+)
LOC110534913 LOC106603425 coding upstream 346377 33061411 ~ 33063183 (+)
LOC110533671 LOC106603546 coding upstream 368546 32981866 ~ 33045499 (+)
LOC110533664 LOC106603537 coding upstream 629628 32639570 ~ 32779932 (+)
LOC110533663 LOC106603538 coding upstream 774465 32599894 ~ 32635095 (+)
samsn1b LOC106603553 coding downstream 58547 33468364 ~ 33492333 (+)
serpinh1a serph coding downstream 143491 33553308 ~ 33557914 (+)
LOC110533682 NA coding downstream 158620 33568437 ~ 33569230 (+)
acer3 LOC106603557 coding downstream 165592 33575409 ~ 33593092 (+)
LOC100136017 mmp13 coding downstream 206567 33616384 ~ 33621122 (+)
G880147 NA non-coding upstream 2101 33407204 ~ 33407459 (+)
G880140 NA non-coding upstream 10510 33398823 ~ 33399050 (+)
G880136 NA non-coding upstream 16455 33392622 ~ 33393105 (+)
G880134 NA non-coding upstream 19101 33389962 ~ 33390459 (+)
G880131 NA non-coding upstream 23873 33385310 ~ 33385687 (+)
G880151 NA non-coding downstream 3510 33413327 ~ 33413603 (+)
G880152 NA non-coding downstream 3879 33413696 ~ 33413936 (+)
G880234 NA non-coding downstream 120832 33530649 ~ 33562850 (+)
G880338 NA non-coding downstream 297847 33707664 ~ 33707872 (+)
G880069 NA other upstream 107822 33300765 ~ 33301738 (+)
LOC110534883 med13 other upstream 2086960 31241426 ~ 31382578 (+)
G877809 NA other upstream 2204142 31205083 ~ 31205418 (+)
LOC110533688 NA other downstream 634677 34044472 ~ 34047724 (+)
hsd20b2 LOC106603577 other downstream 1024725 34422538 ~ 34435620 (+)
LOC110533705 LOC106603578 other downstream 1027523 34437126 ~ 34443357 (+)
rnasekb rnasek other downstream 1048977 34458769 ~ 34472268 (+)
LOC110534915 rps17 other downstream 1077003 34486712 ~ 34488757 (+)

Expression


Co-expression Network