G880151


Basic Information

Item Value
gene id G880151
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33413327 ~ 33413603 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1001565
tctgaatactttccgaatgcactgtatgctagactaaggagatgattgtggactacaggaacattggctacccggactatctgcattgtgtcccgcattgtgtcccgccaacccctcttttacgctactgctactctctgtttatcatatatgcatagccactttaaccatacctacatgtacatactacctcaattagcacGACTATATAACctatgtatatagcctcgctactgttatagcctcgctactgtatacagcctcgctactgttatta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1001565 True 277 lncRNA 0.43 1 33413327 33413603

Neighbor

gene id symbol gene type direction distance location
LOC110533672 LOC106603547 coding upstream 273116 33130843 ~ 33140211 (+)
LOC110534913 LOC106603425 coding upstream 350144 33061411 ~ 33063183 (+)
LOC110533671 LOC106603546 coding upstream 372313 32981866 ~ 33045499 (+)
LOC110533664 LOC106603537 coding upstream 633395 32639570 ~ 32779932 (+)
LOC110533663 LOC106603538 coding upstream 778232 32599894 ~ 32635095 (+)
samsn1b LOC106603553 coding downstream 54761 33468364 ~ 33492333 (+)
serpinh1a serph coding downstream 139705 33553308 ~ 33557914 (+)
LOC110533682 NA coding downstream 154834 33568437 ~ 33569230 (+)
acer3 LOC106603557 coding downstream 161806 33575409 ~ 33593092 (+)
LOC100136017 mmp13 coding downstream 202781 33616384 ~ 33621122 (+)
G880148 NA non-coding upstream 3510 33409560 ~ 33409817 (+)
G880147 NA non-coding upstream 5868 33407204 ~ 33407459 (+)
G880140 NA non-coding upstream 14277 33398823 ~ 33399050 (+)
G880136 NA non-coding upstream 20222 33392622 ~ 33393105 (+)
G880134 NA non-coding upstream 22868 33389962 ~ 33390459 (+)
G880152 NA non-coding downstream 93 33413696 ~ 33413936 (+)
G880234 NA non-coding downstream 117046 33530649 ~ 33562850 (+)
G880338 NA non-coding downstream 294061 33707664 ~ 33707872 (+)
G880339 NA non-coding downstream 295492 33709095 ~ 33737521 (+)
G880069 NA other upstream 111589 33300765 ~ 33301738 (+)
LOC110534883 med13 other upstream 2090727 31241426 ~ 31382578 (+)
G877809 NA other upstream 2207909 31205083 ~ 31205418 (+)
LOC110533688 NA other downstream 630891 34044472 ~ 34047724 (+)
hsd20b2 LOC106603577 other downstream 1020939 34422538 ~ 34435620 (+)
LOC110533705 LOC106603578 other downstream 1023737 34437126 ~ 34443357 (+)
rnasekb rnasek other downstream 1045191 34458769 ~ 34472268 (+)
LOC110534915 rps17 other downstream 1073217 34486712 ~ 34488757 (+)

Expression


Co-expression Network