G880234


Basic Information

Item Value
gene id G880234
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33530649 ~ 33562850 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1001664
gtgaatgaccagcagagagctgggaccaaagtaacaaagcctaccaccagtaacacactacgccgccagggactcaaatcctgcagtgccagacgtgtccccctgcttaagccagtacatgtccaggcccgtctgaagtttgctagggagcatttggatgatccagaagaagattgggagaatgtcatgtggtctgatgagacaaaaatagagctttttggtctaaactccactcgccgtgtttggaggaagaagaaggatgagtaaaaaccccaagaacaccatcccaaccgtgaagcatggaggtggaaacattctttggggatgcttttctgcaaaggggacaggacaactgcaccg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1001664 True 360 lncRNA 0.50 2 33530649 33562850

Neighbor

gene id symbol gene type direction distance location
samsn1b LOC106603553 coding upstream 38894 33468364 ~ 33492333 (+)
LOC110533672 LOC106603547 coding upstream 390438 33130843 ~ 33140211 (+)
LOC110534913 LOC106603425 coding upstream 467466 33061411 ~ 33063183 (+)
LOC110533671 LOC106603546 coding upstream 489635 32981866 ~ 33045499 (+)
LOC110533664 LOC106603537 coding upstream 750717 32639570 ~ 32779932 (+)
LOC110533682 NA coding downstream 5587 33568437 ~ 33569230 (+)
acer3 LOC106603557 coding downstream 12559 33575409 ~ 33593092 (+)
LOC100136017 mmp13 coding downstream 53534 33616384 ~ 33621122 (+)
acat1 acat1 coding downstream 67634 33630484 ~ 33647312 (+)
tmprss2 tmps2 coding downstream 102269 33665119 ~ 33678850 (+)
G880152 NA non-coding upstream 116713 33413696 ~ 33413936 (+)
G880151 NA non-coding upstream 117046 33413327 ~ 33413603 (+)
G880148 NA non-coding upstream 120832 33409560 ~ 33409817 (+)
G880147 NA non-coding upstream 123190 33407204 ~ 33407459 (+)
G880338 NA non-coding downstream 144814 33707664 ~ 33707872 (+)
G880339 NA non-coding downstream 146245 33709095 ~ 33737521 (+)
G880373 NA non-coding downstream 195698 33758548 ~ 33759801 (+)
dscama LOC105030490 non-coding downstream 348758 33730265 ~ 33913890 (+)
G880468 NA non-coding downstream 376585 33939435 ~ 33973224 (+)
G880069 NA other upstream 228911 33300765 ~ 33301738 (+)
LOC110534883 med13 other upstream 2208049 31241426 ~ 31382578 (+)
G877809 NA other upstream 2325231 31205083 ~ 31205418 (+)
LOC110533688 NA other downstream 481644 34044472 ~ 34047724 (+)
hsd20b2 LOC106603577 other downstream 871692 34422538 ~ 34435620 (+)
LOC110533705 LOC106603578 other downstream 874490 34437126 ~ 34443357 (+)
rnasekb rnasek other downstream 895944 34458769 ~ 34472268 (+)
LOC110534915 rps17 other downstream 923970 34486712 ~ 34488757 (+)

Expression


Co-expression Network