G880373


Basic Information

Item Value
gene id G880373
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33758548 ~ 33759801 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1001810
catataaggagagaatggaaaacagagcttcagaaattctgctaattcctgggtgatgcatcatcttggtttcgcctgtagaatgagttctggggcacttacagacaaaatctttgcagattctgaaacttcagagtgttttctttccaaaactgtcaagaatatgcatagtcgagcatcttttcgtgacaaaatatcgcgcttaaaacgggaacgttttttatccaaaaatgaaatagcgcccctagagctctaagaggttaaatAAAGACTAAAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1001810 True 277 lncRNA 0.38 2 33758548 33759801

Neighbor

gene id symbol gene type direction distance location
LOC118936922 NA coding upstream 55837 33700572 ~ 33702711 (+)
tmprss2 tmps2 coding upstream 79698 33665119 ~ 33678850 (+)
acat1 acat1 coding upstream 111236 33630484 ~ 33647312 (+)
LOC100136017 mmp13 coding upstream 137426 33616384 ~ 33621122 (+)
acer3 LOC106603557 coding upstream 165456 33575409 ~ 33593092 (+)
LOC110533688 NA coding downstream 284671 34044472 ~ 34047724 (+)
LOC110533689 NA coding downstream 329936 34089737 ~ 34120835 (+)
LOC110533691 LOC106603565 coding downstream 362920 34122721 ~ 34141656 (+)
LOC110533692 LOC106603566 coding downstream 422211 34182012 ~ 34184477 (+)
LOC110534890 LOC106603566 coding downstream 450003 34209804 ~ 34211775 (+)
G880339 NA non-coding upstream 21027 33709095 ~ 33737521 (+)
G880338 NA non-coding upstream 50676 33707664 ~ 33707872 (+)
G880234 NA non-coding upstream 195698 33530649 ~ 33562850 (+)
samsn1b LOC106603553 non-coding upstream 266215 33468364 ~ 33492333 (+)
G880152 NA non-coding upstream 344612 33413696 ~ 33413936 (+)
dscama LOC105030490 non-coding downstream 151807 33730265 ~ 33913890 (+)
G880468 NA non-coding downstream 179634 33939435 ~ 33973224 (+)
G880497 NA non-coding downstream 226656 33986457 ~ 33986658 (+)
G880556 NA non-coding downstream 321313 34081114 ~ 34081326 (+)
G880558 NA non-coding downstream 323259 34083060 ~ 34083400 (+)
G880069 NA other upstream 456810 33300765 ~ 33301738 (+)
LOC110533672 LOC106603547 other upstream 623634 33130843 ~ 33140211 (+)
LOC110533671 LOC106603546 other upstream 713049 32981866 ~ 33045499 (+)
LOC110534883 med13 other upstream 2435948 31241426 ~ 31382578 (+)
G877809 NA other upstream 2553130 31205083 ~ 31205418 (+)
hsd20b2 LOC106603577 other downstream 674741 34422538 ~ 34435620 (+)
LOC110533705 LOC106603578 other downstream 677539 34437126 ~ 34443357 (+)
rnasekb rnasek other downstream 698993 34458769 ~ 34472268 (+)
LOC110534915 rps17 other downstream 727019 34486712 ~ 34488757 (+)

Expression


Co-expression Network