G880468


Basic Information

Item Value
gene id G880468
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33939435 ~ 33973224 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1001913
TTTACCTCTTTGGGATATTTATTAAGTATATATTATTTGAAGGTGTCTACTGAAGGATGATGGTATTGTACCGTATATTCTACTCATTTGGTTTTGAGCAATGACTTCAAAGGAAACAATGGGGATTTAAATCACAAGATCAATAGAAACACAATCAAAAccaacaaatgtaaaaaataaaagtcAAAACCAGAAGAAAAATACTTTTTCTATTGACGTTGATGTTAAAGGGAAGCAAGGAAGAAAGAAAATATCCACAATTTTCACATGAATAATGGAATAAGCCCTAGATTTAGTTGCCAAGTTGCAGAGAGATATCAGAGACATTGGAAATAAAATTAGACCCATTGATTCAATTCTAAATGCTTCAGTCATAAGGTATGAAAGACAATTGGCACGGCGCTAGCTGGGAGGGATCAAACAAAACAAGCTGCATTGCCTGGAAACACTCCACAGTGAGAGGTAAACACCATTAACAAACCTCCTAGGAAAATAAAATCTTTCGATTTATGATGCCATAGCTGAAAAGAATGCCAATGCAATCATGACTGGAATCTGACGATCAATCATCACAAATACATGTTCCTCCTGAGGGAGATAAAACCCTAGTTCCAGTTCCTTAATTGCTTTACGAGCGAACCTACTTATTAAGCAGTTTTTTACTGTTCAAATGTGTATGTTATAGCATACATGACATGAGACATGAGAGTACTACTAAGGGTTTGGACTGCTACAGCAACTGGACAATATAGAGAGTATAACATTATCAATAAAACACAAAAAAAGCAAAATCATAGGAAAGATCAAGATATATCCATAACTTAATCATCATTTATGGACACAGCAATGAATAATAAGTTACACATAATAATTTCACAAAGATATCAGTGATCCCTTGATTCTTTAACTCCAAACCCTCCCTCCAGCCGTTGAGTCCATAACAGTGTGGTTTGATTGACATGCAAGACCAAGCCCCCAATTGGTGCAGTCCCAGCTTATAGGAGGAGACAGAGCTGCCTGGCCCTGTCCTGCCCACTCTAGGACTTCACTTCCTGCTTCTTCTTGCTCTGGAACTTCCTGAACTGTGATTGGATCGCCACAGCAGCCTTCTCCGTCTCAGGGGCCTTCATGTCGATGTCCGCAAAGTCCTCCTCAGGAGCATCCTTCTTGGAGTCATCTGTCCAGAAGGTTTGCTGTTTCCACTCATGGCTCCAGATCCTGGTCTCTCACTCATGATTTATAAGTGTTGTAGTTACGATGATTCCAGTACTTGATGTACACTTGTCACTCGTAAGCAGTCCTCCCGTCC

Function

NR:

description
Purkinje cell protein 4-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1001913 True 1309 lncRNA 0.39 3 33939435 33973224

Neighbor

gene id symbol gene type direction distance location
dscama LOC105030490 coding upstream 26019 33730265 ~ 33913890 (+)
LOC118936922 NA coding upstream 236724 33700572 ~ 33702711 (+)
tmprss2 tmps2 coding upstream 260585 33665119 ~ 33678850 (+)
acat1 acat1 coding upstream 292123 33630484 ~ 33647312 (+)
LOC100136017 mmp13 coding upstream 318313 33616384 ~ 33621122 (+)
LOC110533688 NA coding downstream 71248 34044472 ~ 34047724 (+)
LOC110533689 NA coding downstream 116513 34089737 ~ 34120835 (+)
LOC110533691 LOC106603565 coding downstream 149497 34122721 ~ 34141656 (+)
LOC110533692 LOC106603566 coding downstream 208788 34182012 ~ 34184477 (+)
LOC110534890 LOC106603566 coding downstream 236580 34209804 ~ 34211775 (+)
G880373 NA non-coding upstream 179634 33758548 ~ 33759801 (+)
G880339 NA non-coding upstream 201914 33709095 ~ 33737521 (+)
G880338 NA non-coding upstream 231563 33707664 ~ 33707872 (+)
G880234 NA non-coding upstream 376585 33530649 ~ 33562850 (+)
G880497 NA non-coding downstream 13233 33986457 ~ 33986658 (+)
G880556 NA non-coding downstream 107890 34081114 ~ 34081326 (+)
G880558 NA non-coding downstream 109836 34083060 ~ 34083400 (+)
G880559 NA non-coding downstream 112332 34085556 ~ 34085979 (+)
G880560 NA non-coding downstream 113637 34086861 ~ 34087082 (+)
G880069 NA other upstream 637697 33300765 ~ 33301738 (+)
LOC110533672 LOC106603547 other upstream 804521 33130843 ~ 33140211 (+)
LOC110533671 LOC106603546 other upstream 893936 32981866 ~ 33045499 (+)
LOC110534883 med13 other upstream 2616835 31241426 ~ 31382578 (+)
G877809 NA other upstream 2734017 31205083 ~ 31205418 (+)
hsd20b2 LOC106603577 other downstream 461318 34422538 ~ 34435620 (+)
LOC110533705 LOC106603578 other downstream 464116 34437126 ~ 34443357 (+)
rnasekb rnasek other downstream 485570 34458769 ~ 34472268 (+)
LOC110534915 rps17 other downstream 513596 34486712 ~ 34488757 (+)

Expression


Co-expression Network