G881179


Basic Information

Item Value
gene id G881179
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 34034805 ~ 34043998 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1002674
AAAATGGCGACCGGGTAGGTCTGGTTGCTATTGCAACACTGTCAAAAGGTTGTTACCGTCAATGTCCTCCTATTTAATTCCAGAAATGGTCAGCAGGCCACAGTCAAGTAAGgcCGTGCTGATGATGTCTCTGATCTGGAAGTACTATGCTGACCCAGTGACGGTTCTGCCCAGTAAGTGGCTTTTCTCCTCTAGAGCGAATGGTGGCCTTCCCATCTGGAGTAGCAGATGGCGTTGGAATCCCATGGCGGCTCGTTGTTTGTAACAAGGCTGTTACATTTTGATAAACCATCAGGATTGTTTTGTAGCATTTTCTTTCTTTACCAATCCATTCCTCGTCATGAAACTACATCAGACTTTTCAAAGTTGTTTTATGAACTAAGTCTGGCTTAATAATGGTTACAATTTGTTCCTTTTCTAAATTATTCAAGCCATATCACTCTTTTACCTACATGCAACAGTGTTCTGCTGTGCATCTTTGTTTGTCGGTTGCCTACTTTATAACCCTCTtccagaattattattattttgactTATCAATAAAAACCTGCAAAACATT
>TU1002675
AAAATGGCGACCGGGTAGGTCTGGTTGCTATTGCAACACTGTCAAAAGGTTGTTACCGTCAATGTCCTCCTATGTGAGTATATAATTCAAGCGGTAACGTTTACAAATTGTAGCCCTATTTTACCGGTAAAGCTGTGTTCAAACTCTGAAGTTGTGTTGACATGTTTCTCTGTAATAGTCTAGCACAGGGACATGATGTTCGTTCTCCTACTGGGAGAGATTGACAAAGACCCGCAAACATTTAATGGCTGGTGATGGTGACTCAGAGTTTATCTCCCTCTCCAAAACTTGTCATCTGCTCTTCAACCTTATGACTATCCTTCCTTGCTCATTTTAGCACCATAAGCGTTGCAGGCTGAAGAGTAAGACATCTCCGTGATATAAGGGTAAATGCCACATTTGGGAAtatataaaaacaaaaatgtcATTGATTTTACCGAGTTACAGCTCATATGagaaaatctgtcaatttaattaaattcattaggcccaaatctatggatttcacgagtgggaatacagatatgtcaCAGATATACcctgcccccccaaaaaaaacaatgggcctcaggagctTGTTAggggtatttttgtgcattcaaattgccattgataaaatgcaattgtgttcattgtctgtaatttatgcctgcccataccataaccccaccatggggcactctgttcaaaacgttgacatcagcaaactgctcgcccacacagcGCCGTACttatggtctgcggttgtgaggccggttggacaaaatgccaaattctctaaaacgatgtttgaggtggcttatggtagagaaattaacattcaattttcCCTGATTTCCAATGCTTTCTCAATGGGAGTCATACGTTGACAGTCGGCAGAGATGACGCGTTCATATCCATACAATTTCCACGGACAGAAAGTTCAGATGTGTTGAACTTTTGAAGGGCCGATGGATACGCAACCATCCATTTAGAAAAGAGAGCATTTTACACAGCTAGGACAGTATACCAAATAccagggtatttggaaatagctactggataaacatttttttaataccGTTAACTATTTATTTTAAGTTCAACTACTTATTAATTAAATACCTGCATTCAACTTGAGCAATAGGTTAGAATATAAAGCAGATTGCGTTTTTCATTTTGAGTTTACCATAGTTCCctagaacagttgagccagtcatgtttgtttgtaaatagcacaaagCGGGAGCAGGTCCAACTGTGTATTTACAGGGTTCCTGTTTTATACTGAAAGTCACCTGTGTTATTtttgcttcaatagagtgatcagggaccaactatagttttccttcacagaaaatacattcattttcatcagatgacaacagaagtgcaacTCTATTTGGCTGGTATCCACACAAGGCTAAATtagcttacaatgaaaaagcaagaTATATTTTTTGCAAAAACTATACATGGGCATACTTCTGTTTTATaataggaaatgtagctggctacattctaACTTTTTTCTCAAAGTTAATCTGGCattttaccagagaaaagtaggctggctacacagAAAAGTACCATAGAAAATTAGCTACACAtaagtcagagtgctgtctgtctgctgatagaatgctgTTTGTGAATTCTGGAGAGGTGCAACTGAAACACCAAATGAGTCTGATGCTGAGTAGAAATTTAAATTAGAAGCATTTCAGATCTGTGTTGACAAAACACAGCAAGATATTTCTTatgcattttctttttttttctgcgTGAAAACTAATTGTTCTCCCCATCTTCTCTGAGCAGGCATGCCCGTTGCCCCAgcgactccagactccacacagacacagcgtgtacacatgctgctccagagccagTACTCTTCATGTGCACAATGTCTCTCATTCGCTTCtaaatgtccaaactcaccaaaaatTATATTTGGTTGCTCCTActtcctacctacagtacattcggaaattatggtaaattcaattgattggacatgatttggaaaggcacagatctgtctatataaggtcccacagttgagggtgcatgtcagaccaaaaaccaagccatgaggttgaaggaattgtccatagagctcccaGACATgattatgttgaggcacagatctggggaagggtaccaaaacatttctgcagctttaaagatccccaagaacacagtggcctccatcattcttaaatagaagaagtttggaaccaccaaaacacttcatagagctggctgcccttccaaactgagcaatcggagggcCTTAATCAGGgggttgaccaagaacccgatggtcactctgacagagctccagagttcctctgtggagatgggagaaccttccagaaggacaaccatctctgcatcattccaccaatcaggccagatggaagccactcctcagtaaaaggcacatgacagcctgcttggagtttgccaaaaggcacctaaaggagaaacaagattctctggtctgatgaaactaagattgaactctttagcctgagtTCCAAGGGTCACAtccggaggaaacctggcaccatccctacggtgaagcatggtggtggcagcattgtgctgtggggatgtttttcagcagcatggggctgggagacgagtcaggattgagggaaagatgaaaacctgctccagagcgctcagtagTGCATtcgaaagtatttagaccccttgattttgttcaattacagcctcattctaaaattgattaaattgttttttttccgctcatcagtctacacacaatacccaataatgacaaagcaagacCAGGTTTTTTattttagatagctggccgctagaTTAATTTACCAATCAAAAAATtttttgctgacatgggctaattgagtgactcaGTGAATGACATAATGAGGAAAAACTGTTGATGTGTAAAAGTCTTGCTTGCTTCTCTCTCCTCattgtattgtattattattttttcattttGGTTAATTGATCTGCGGGCCACCAGTTGCCCATCTCTGTTCTAAAGAGATATTTGTTTTATCTCATGTCCACACATACAAGTATGCATTGTTCCCTTAACTTCTAGAGATTTTTGTCAAATGAAATATAGCCTATAGAATATTTACCATTAAAAACACTATTAGTATAATGAGACATGGTGGAGGTATGGCCTTGTTAATATCACCAATTTTTCCTTCCTTTCACTTAGCTGGTTTAGTAGGTGGGTTTCAGATAACCGCTCTGAGTGTTCACTTAGGAGGCCTCTGTCACAGCTGCAGCCTGTTGCCATCGGCCTTCTCTGGCCCTCTCTGTTTTCTCATTTTCCCGCTCGATCTCTTGAGTCCCTGACCGTAACAGAGGAAGGAAAAGGGCTCCCTTTCAAGAATGTGCCATTTAGCAGCACACCACTTCCACAGACCAGTGGTGACCCAATACAGGACCATTATTTTGTCCGAATGGAACTAAAATATACTTGTAGATACTATACCCCATGCAGATTTATTTTAAGGGAAGAATGTGCTGAAAATTTCTGTTTTCACTGGAGTCAAAGATAATTCTACCACTCCTCTATCATTTCAAATGTGAAACCAAAGCACAATGACACAGTGAAATAATTTAATGGAGAAGTTTTCAAATCTTTAGGGTGTTAGCGCCCTTAAATTAATTGTGGTGCAGTAAATGCAGCGATCAGTATGAATACATGGAGGGTTTCAAATTAGAAATCTCCCATAATCCTCAGGATAGAGCTTGAGGTGGATGAAGGAAGGTAAAGGTGACCTTGACGTGAGACACTTCCTGTGGCTTGACCAAAGCTTCTTTGAGGAGGGGCAACACTTCTGCTGACATCTCCACCCCTTCTAACCAGCTGCCGTACAGTCTCACCTGTTGGCCTTACAGTTCCACTGTgatactgtctctctgtgtcagaaACCACACTCTATTATCAGTTTGTTGCCTGAAgtttgtatttttctctcttcccccaGTTAATTCCAGAAATGGTCAGCAGGCCACAGTCAAGTAAGgcCGTGCTGATGATGTCTCTGATCTGGAAGTACTATGCTGACCCAGTGACGGTTCTGCCCAGTAAGTGGCTTTTCTCCTCTAGAGCGAATGGTGGCCTTCCCATCTGGAGTAGCAGATGGCGTTGGAATCCCATGGCGGCTCGTTGTTTGTAACAAGGCTGTTACATTTTGATAAACCATCAGGATTGTTTTGTAGCATTTTCTTTCTTTACCAATCCATTCCTCGTCATGAAACTACATCAGACTTTTCAAAGTTGTTTTATGAACTAAGTCTGGCTTAATAATGGTTACAATTTGTTCCTTTTCTAAATTATTCAAGCCATATCACTCTTTTACCTACATGCAACAGTGTTCTGCTGTGCATCTTTGTTTGTCGGTTGCCTACTTTATAACCCTCTtccagaattattattattttgactTATCAATAAAAACCTGCAAAACATT

Function

NR:

description
Putative transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1002674 False 559 lncRNA 0.41 4 34034805 34043998
TU1002675 True 4472 lncRNA 0.41 3 34034805 34043998

Neighbor

gene id symbol gene type direction distance location
LOC110533687 NA coding downstream 61516 33939072 ~ 33973312 (-)
LOC110533683 serph coding downstream 458351 33555433 ~ 33576454 (-)
LOC110533678 LOC106603555 coding downstream 489293 33494333 ~ 33545512 (-)
LOC110533676 LOC106603552 coding downstream 635728 33341342 ~ 33399077 (-)
LOC110533674 LOC106603551 coding downstream 716534 33257944 ~ 33318271 (-)
LOC110534889 NA coding upstream 140936 34184934 ~ 34185439 (-)
LOC110534891 LOC106567904 coding upstream 168589 34212587 ~ 34217566 (-)
LOC110534914 LOC106603428 coding upstream 180950 34224948 ~ 34225889 (-)
LOC110534892 LOC106603428 coding upstream 189138 34233136 ~ 34234195 (-)
LOC110534893 LOC106603570 coding upstream 203479 34247477 ~ 34248415 (-)
G881250 NA non-coding downstream 43035 33991558 ~ 33991770 (-)
G881243 NA non-coding downstream 49027 33985521 ~ 33985778 (-)
G881242 NA non-coding downstream 49925 33984610 ~ 33984880 (-)
G881183 LOC106603559 non-coding downstream 139685 33894620 ~ 33895120 (-)
G881090 NA non-coding downstream 275004 33758562 ~ 33759801 (-)
G881177 NA non-coding upstream 2208 34046206 ~ 34047706 (-)
G881297 NA non-coding upstream 33633 34077631 ~ 34077969 (-)
G881302 NA non-coding upstream 41639 34085637 ~ 34085882 (-)
G881323 NA non-coding upstream 73247 34117245 ~ 34125631 (-)
G881318 NA non-coding upstream 74307 34118305 ~ 34118779 (-)
G880994 NA other downstream 355966 33613325 ~ 33678839 (-)
LOC110533673 NA other downstream 783284 33153970 ~ 33251521 (-)
G880807 NA other downstream 869783 33162912 ~ 33165022 (-)
G880718 LOC106603546 other downstream 996922 33036163 ~ 33037883 (-)
G881778 NA other upstream 369065 34413063 ~ 34417261 (-)
LOC110533714 rbmx2 other upstream 548324 34589717 ~ 34596263 (-)
LOC110534894 gpr119 other upstream 554369 34597247 ~ 34599007 (-)
LOC110533718 LOC106603592 other upstream 848981 34891059 ~ 34893957 (-)
G882578 NA other upstream 1258916 35302914 ~ 35304055 (-)

Expression


Co-expression Network