G881177


Basic Information

Item Value
gene id G881177
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 34046206 ~ 34047706 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1002669
TACAACCAAATTTTTATTGGTTTGTTTATACCAATCATTACACAGATACATCTATAAACAAAGAATAAAAGAACTGTACACTTGTACTTGATACCTAAACCCCACATGAATATTGCTACTGCTGGTTTGTGTATTTGACAGCTCAAATGGATGTAGTTTCTCAGCATCCAAGGAACCATAATAGTCAGTATATTTAACTTATGTACTTCTTTAGCTTGGCTAAGAACACAATTCCATTTTTACCATACTCACAATGTACCATTACACACTGCATATAGAAAGTTGAAAACCCCTTTTAATAGCAGCTATACAAATTTATTGCAATGCTATCACAGAACAGAGACAACCAATTACACCCAATGCACAGGCCTGATAGGGAGGAACTCCAGTACTAGGGAATAGGTTTATTAAGCAGAATGGTAAAGAAAAACATAATGAGTACAAGAGTTAACATATGGAACACAGTTTAAACATCttaaaatgttttcctcattatAAACAATAAAACAATGTGTTCCCCCTTGAGTTAATTCATCCCCACCACACAATGCAGGTTACGTATACCTTCCCTCATATAGCCTATGGAATGTTAGTCTCTCAGACAAGCTCTCTGTTGTTTTGACCGGATCCTGTAAACGACGTGCTTGCATGTTCTTGGTGTAGTAACCTGTCCCATTCCCACCCCTCCCCCATATCGAAAATAAAAACCGTTGACATTTACAATGACCGTAATTGTTCCAGAGATGTAAAAACATGGGATGCAATGAAATCCCCAtctcaaattgtattttttatttcataaaAAAATGTGTTTCTACAATCAAACTACTAAAAAACCTGCATTTAGAAAATAGTCGATAAAAATATACCCCTGAATTGTACAAGAAAAAGAGGTACAGGGAGCACTGATAAAAGATGTGGTTTGAGAGATGTTATTCTGccgcctcttcctcctctttctgttcAGGTTCTTCTGGTGCCTCCTCCTCAGCTTTGGCTTCTCCATTCTCTGCGGGCACCTCCTTCTCAGGCTCGGTCTTTTTCACCTCTTTAGCCTTCTTGGGCTTAGGTGCTGCCTTCTCCTTCTTTGGCTTGGGCTCTGCCTTTGCAATTGCAGGTTTATTTACCAATCTCTCAGATCT
>TU1002670
TACAACCAAATTTTTATTGGTTTGTTTATACCAATCATTACACAGATACATCTATAAACAAAGAATAAAAGAACTGTACACTTGTACTTGATACCTAAACCCCACATGAATATTGCTACTGCTGGTTTGTGTATTTGACAGCTCAAATGGATGTAGTTTCTCAGCATCCAAGGAACCATAATAGTCAGTATATTTAACTTATGTACTTCTTTAGCTTGGCTAAGAACACAATTCCATTTTTACCATACTCACAATGTACCATTACACACTGCATATAGAAAGTTGAAAACCCCTTTTAATAGCAGCTATACAAATTTATTGCAATGCTATCACAGAACAGAGACAACCAATTACACCCAATGCACAGGCCTGATAGGGAGGAACTCCAGTACTAGGGAATAGGTTTATTAAGCAGAATGGTAAAGAAAAACATAATGAGTACAAGAGTTAACATATGGAACACAGTTTAAACATCttaaaatgttttcctcattatAAACAATAAAACAATGTGTTCCCCCTTGAGTTAATTCATCCCCACCACACAATGCAGGTTACGTATACCTTCCCTCATATAGCCTATGGAATGTTAGTCTCTCAGACAAGCTCTCTGTTGTTTTGACCGGATCCTGTAAACGACGTGCTTGCATGTTCTTGGTGTAGTAACCTGTCCCATTCCCACCCCTCCCCCATATCGAAAATAAAAACCGTTGACATTTACAATGACCGTAATTGTTCCAGAGATGTAAAAACATGGGATGCAATGAAATCCCCAtctcaaattgtattttttatttcataaaAAAATGTGTTTCTACAATCAAACTACTAAAAAACCTGCATTTAGAAAATAGTCGATAAAAATATACCCCTGAATTGTACAAGAAAAAGAGGTACAGGGAGCACTGATAAAAGATGTGGTTTGAGAGATGTTATTCTGccgcctcttcctcctctttctgttcAGGTTCTTCTGGTGCCTCCTCCTCAGCTTTGGCTTCTCCATTCTCTGCGGGCACCTCCTTCTCAGGCTCGGTCTTTTTCACCTCTTTAGCCTTCTTGGGCTTAGGTGCTGCCTTCTCCTTCTGTAAATAAATATGTTTAATGGGATAAGACACCGTAAGTCTTTAATTGCAATTAATTTACTATTAAATTTACATTTGTAATGTCTGCACTTCCTCACCTTTGGCTTGGGCTCTGCCTTTGCAATTGCAGGTTTCTGCAATGAAAGATTTGTGATTCTTTGCTGAAATTCTGTTTTTGGGTGCATCTTTAATTAAAGTGTTGATAATGGTGTGTAATACTCACATTTACCAATCTCTCAGATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1002669 False 1142 lncRNA 0.38 4 34046206 34047706
TU1002670 True 1329 lncRNA 0.37 2 34046206 34047706

Neighbor

gene id symbol gene type direction distance location
LOC110533687 NA coding downstream 72917 33939072 ~ 33973312 (-)
LOC110533683 serph coding downstream 469752 33555433 ~ 33576454 (-)
LOC110533678 LOC106603555 coding downstream 500694 33494333 ~ 33545512 (-)
LOC110533676 LOC106603552 coding downstream 647129 33341342 ~ 33399077 (-)
LOC110533674 LOC106603551 coding downstream 727935 33257944 ~ 33318271 (-)
LOC110534889 NA coding upstream 137228 34184934 ~ 34185439 (-)
LOC110534891 LOC106567904 coding upstream 164881 34212587 ~ 34217566 (-)
LOC110534914 LOC106603428 coding upstream 177242 34224948 ~ 34225889 (-)
LOC110534892 LOC106603428 coding upstream 185430 34233136 ~ 34234195 (-)
LOC110534893 LOC106603570 coding upstream 199771 34247477 ~ 34248415 (-)
G881179 NA non-coding downstream 2208 34034805 ~ 34043998 (-)
G881250 NA non-coding downstream 54436 33991558 ~ 33991770 (-)
G881243 NA non-coding downstream 60428 33985521 ~ 33985778 (-)
G881242 NA non-coding downstream 61326 33984610 ~ 33984880 (-)
G881183 LOC106603559 non-coding downstream 151086 33894620 ~ 33895120 (-)
G881297 NA non-coding upstream 29925 34077631 ~ 34077969 (-)
G881302 NA non-coding upstream 37931 34085637 ~ 34085882 (-)
G881323 NA non-coding upstream 69539 34117245 ~ 34125631 (-)
G881318 NA non-coding upstream 70599 34118305 ~ 34118779 (-)
G881340 NA non-coding upstream 102444 34150150 ~ 34150356 (-)
G880994 NA other downstream 367367 33613325 ~ 33678839 (-)
LOC110533673 NA other downstream 794685 33153970 ~ 33251521 (-)
G880807 NA other downstream 881184 33162912 ~ 33165022 (-)
G880718 LOC106603546 other downstream 1008323 33036163 ~ 33037883 (-)
G881778 NA other upstream 365357 34413063 ~ 34417261 (-)
LOC110533714 rbmx2 other upstream 544616 34589717 ~ 34596263 (-)
LOC110534894 gpr119 other upstream 550661 34597247 ~ 34599007 (-)
LOC110533718 LOC106603592 other upstream 845273 34891059 ~ 34893957 (-)
G882578 NA other upstream 1255208 35302914 ~ 35304055 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G386563 NA non-coding CI01000197 null 214337 ~ 217468 (-)