G881480


Basic Information

Item Value
gene id G881480
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 34322946 ~ 34328278 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1003010
AATCCTGCAACCGGCGTTTCGGGAAGaagaatttattgaaagttcccggAACACTGCTGCGGTTTAGGGGAGTGAGTGAGGAGGGGAATTAGTAACACAAGCAAACACAGACTCAGTGAAGCCATCCGTAACTCTGGGACCTTTCCCCCAGTTTTAGACCCAGAAAGGGAGAACAGATAtttgtcacgattcttcaaaatcgaacccagaagcagaccaggacaaggagagtaggaagaaggtgagtatttatttacaagtgaatgtgaatgggtagatatatccaggtggtgtagcgggtagcggtggtgagttgatgggagtaaataggtggatccaatggggaagcggaatcctctgacgaccaggcgggaatggggtaaatgatccgggtgagtaactgaagacagaacaaacagaggtaagttcaaggcaagcaatacgtaacaaacaacaaaacaaattctatccaacttgaggctgatactct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1003010 True 490 lncRNA 0.46 2 34322946 34328278

Neighbor

gene id symbol gene type direction distance location
LOC110533694 LOC106603569 coding upstream 414 34299393 ~ 34322532 (+)
LOC110534890 LOC106603566 coding upstream 111171 34209804 ~ 34211775 (+)
LOC110533692 LOC106603566 coding upstream 138469 34182012 ~ 34184477 (+)
LOC110533691 LOC106603565 coding upstream 181290 34122721 ~ 34141656 (+)
LOC110533689 NA coding upstream 202111 34089737 ~ 34120835 (+)
LOC110533696 slc13a5 coding downstream 37774 34366052 ~ 34377940 (+)
med31 med31 coding downstream 51957 34380235 ~ 34387056 (+)
LOC110533700 LOC106603575 coding downstream 59464 34387742 ~ 34391447 (+)
LOC110533701 LOC106603576 coding downstream 63432 34391710 ~ 34397234 (+)
hsd20b2 LOC106603577 coding downstream 94260 34422538 ~ 34435620 (+)
G881449 NA non-coding upstream 54576 34267868 ~ 34268370 (+)
G881409 NA non-coding upstream 110378 34212289 ~ 34212568 (+)
G881379 NA non-coding upstream 132765 34189932 ~ 34190181 (+)
G881377 NA non-coding upstream 133783 34188929 ~ 34189163 (+)
G880560 NA non-coding upstream 235864 34086861 ~ 34087082 (+)
G881486 NA non-coding downstream 3452 34331730 ~ 34332049 (+)
G881488 NA non-coding downstream 4782 34333060 ~ 34333466 (+)
G881499 NA non-coding downstream 35488 34363766 ~ 34363998 (+)
G881498 NA non-coding downstream 36435 34364713 ~ 34365944 (+)
LOC110533688 NA other upstream 275222 34044472 ~ 34047724 (+)
G880069 NA other upstream 1021208 33300765 ~ 33301738 (+)
LOC110533672 LOC106603547 other upstream 1188032 33130843 ~ 33140211 (+)
LOC110533671 LOC106603546 other upstream 1277447 32981866 ~ 33045499 (+)
LOC110534883 med13 other upstream 3000346 31241426 ~ 31382578 (+)
LOC110533705 LOC106603578 other downstream 109062 34437126 ~ 34443357 (+)
rnasekb rnasek other downstream 130516 34458769 ~ 34472268 (+)
LOC110534915 rps17 other downstream 158542 34486712 ~ 34488757 (+)
G881536 NA other downstream 161542 34489820 ~ 34494101 (+)

Expression


Co-expression Network