G881949


Basic Information

Item Value
gene id G881949
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 34681520 ~ 34681966 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1003522
ctcaatgaggaacgctgtatatgtcccaggaggcctgtaaacagtagctataaaaagtgattgagtaggctgcatagatttcatgactagaagctcaaaagacgaaaacgtctttttttttgtaagttgaaatttgctatcgtaaatgttagcaacacctccacctttgcgggatgcacgggggatatggtcactagtgtagccaggaggtgaggcctcatttaacacagtaaattcatcaggcttaagccatgtttcagtcaggccaatcacatcaagattatgatcagtgattagttcattgactataattgcctttgaagtaagggatctaacattaagtagccctattttgagatgtgaggtatcacaatctctttcaataatgacaggaatggaggaggtctttatcctagtgagattgctaaggcgaacaccaccatgttt

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1003522 True 447 lncRNA 0.40 1 34681520 34681966

Neighbor

gene id symbol gene type direction distance location
LOC110534894 gpr119 coding downstream 82513 34597247 ~ 34599007 (-)
LOC110533714 rbmx2 coding downstream 85257 34589717 ~ 34596263 (-)
ap4m1 ap4m1 coding downstream 152743 34521230 ~ 34528777 (-)
LOC100335039 LOC100335039 coding downstream 172747 34494606 ~ 34560547 (-)
c10h17orf49 cssa04h17orf49 coding downstream 222019 34443569 ~ 34459501 (-)
LOC110533718 LOC106603592 coding upstream 209093 34891059 ~ 34893957 (-)
LOC118936924 NA coding upstream 242965 34924931 ~ 34925923 (-)
si:ch211-284e13.4 LOC106603593 coding upstream 271885 34953851 ~ 34967269 (-)
si:ch211-284e13.6 LOC106603595 coding upstream 298216 34980182 ~ 34989463 (-)
gucy2d LOC106603596 coding upstream 310391 34992357 ~ 35012867 (-)
G881947 NA non-coding downstream 1938 34679345 ~ 34679582 (-)
G881945 NA non-coding downstream 3880 34677400 ~ 34677640 (-)
G881924 NA non-coding downstream 37811 34643479 ~ 34643709 (-)
G881916 NA non-coding downstream 44620 34636418 ~ 34636900 (-)
G881905 NA non-coding downstream 60134 34617598 ~ 34621386 (-)
G881950 NA non-coding upstream 209 34682175 ~ 34682401 (-)
G881952 NA non-coding upstream 4194 34686160 ~ 34686376 (-)
G881953 NA non-coding upstream 5099 34687065 ~ 34687348 (-)
G881919 NA non-coding upstream 57357 34739323 ~ 34741133 (-)
G881995 NA non-coding upstream 104120 34786086 ~ 34786287 (-)
G881778 NA other downstream 264259 34413063 ~ 34417261 (-)
LOC110533687 NA other downstream 708208 33939072 ~ 33973312 (-)
G880994 NA other downstream 1002681 33613325 ~ 33678839 (-)
G882578 NA other upstream 620948 35302914 ~ 35304055 (-)
G882539 NA other upstream 638848 35320814 ~ 35321706 (-)
G882631 NA other upstream 745283 35427249 ~ 35428208 (-)
G882971 rb1 other upstream 916351 35598317 ~ 35599085 (-)

Expression


Co-expression Network