G881919


Basic Information

Item Value
gene id G881919
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 34739323 ~ 34741133 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1003491
TCCTTAAATGATTTTACAACATACAAGATGCCAATTGTACCAAAGCAATACTTACTAATACAACATGGGGAAGTTTAGTGGTTAACTTGTAGCCTGCATACAGCACCCGAGAGGGTTGGTTGGTTGTTATTCTGCAGAAATGCATGTATAGTACAGTACCTACCTACACACGGAGCCCTTCCCCTCAACACCTGGCCACCTGGGAGATAGAGCTCTTCAGGGGAAGGACTGTAGAGGAGAGGACATACACCTGGGCCTTACACATTGGCCATGAAGTGTatgggtgtgtatttgtgtttgtgtgtgtatttgtgAAATGAATCACGGAGCAAATAGTGAAGTTGAGGTACATCATAAAAGGTGTGGCACATAGTAAATGAACTTCTCCTCCACAGTGCAAAACCTCTAGAAGAATTGTTAGAAGTATTGACCAGGTCTGTGACTCAAGGTAAATGTTCACTATAATAGAAAATAATCATAGCAACATCAATCATAATAAAAAGGGGAATACAATACATACATGTATACAATAACAGTCTGTATGTACATATAAAAATATAGCAAAGTAACTTCAACAAataggatgagtgtgtgtgttcataggTGAATACAagcacacacgtgcacgcacatacaatcacacacacacacgcgcttgACACAGCGTGTTACTTTTCACATCCGGTTTGAATATCAGTACAGAAGACAaccagaccccccccccagactgagtccctcagtccctccatctctcctcgcCTGTTCTTCATCTCCCAGTGTTGGAATGGTATGACCTCACTCCCACAGCTTCACTCACTCCAACATCAGTCCTTCTAACGGACAGTCACCCTGTCCACAacctcctccttcccttccttttCCTTTCCTCCCTTCTCCACTTCCACAGCTCTCTCCCACACTCTACTTTCCTCCattcacctccatccctccctccttccccattaGAAGCTATCATACAGCTAATTGCCTCCTCTCAGAGATCAACTCTCAGAGAAGGAGGACTGGAACCTATTAAGCGTCTGCATGCTTTCCAGCCGAAACAGTTTGGAATAGTGactgcatatattatgacaacattttttttatgtttttgttcgtTTTGGTCTTCGGCAAGGGTGTTTTTGGTTGTTCGGGCACACCAAACTTTTTCTCAAGACAAGCAGAAATCGGTACCCGAAGTCTAGGCCTCTTCATTGGTGATTGGACAACAGTAAGGATTGTTTGTGGTCATTCAACGTGAGACGAATAGTTTTCATTCAAATTTTTTCGCTGGACAAATACTGCACctaacatcttagttagatgtaaaattgagcAACTAAGATCTCAACATTAATGACAAATTCCTTGAGTTATCTGACTATTTTTAGGAAGTGTATTCTGGCTACAGCGTCTCAGAACGGACAACCAGTACTATTGCTGCTTCTTTCTCATTTATCAAGTGATGGTCTTCTAATAGAGTATGTGAGCGCACTTGTTCAGTTTGACCTGCTGAACTGCCAACCTGAAGCACACTGACACCTTTACTTAGTCCATACAGTTAGTAGGAATGTAACTGGGAGGGAAGGGGTGCTAAGATGTGATGCTGGAAGGTGTTAGCTagcccccctccaccccccagtgGGGTCGGGGGGAGGACTCGCCTGAGGTTGATCAAACTGGCCAGAGGAATCTGTCAAGAAGAGGAAAGCCCTGACCATGCAAAATGCATAATGTGTTGTGGACGCAGTGGTAAGGATCTATAACGGAGGTAACATTTCTTATCTGGCT

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1003491 True 1791 lncRNA 0.44 2 34739323 34741133

Neighbor

gene id symbol gene type direction distance location
LOC110534894 gpr119 coding downstream 140316 34597247 ~ 34599007 (-)
LOC110533714 rbmx2 coding downstream 143060 34589717 ~ 34596263 (-)
ap4m1 ap4m1 coding downstream 210546 34521230 ~ 34528777 (-)
LOC100335039 LOC100335039 coding downstream 230550 34494606 ~ 34560547 (-)
c10h17orf49 cssa04h17orf49 coding downstream 279822 34443569 ~ 34459501 (-)
LOC110533718 LOC106603592 coding upstream 149926 34891059 ~ 34893957 (-)
LOC118936924 NA coding upstream 183798 34924931 ~ 34925923 (-)
si:ch211-284e13.4 LOC106603593 coding upstream 212718 34953851 ~ 34967269 (-)
si:ch211-284e13.6 LOC106603595 coding upstream 239049 34980182 ~ 34989463 (-)
gucy2d LOC106603596 coding upstream 251224 34992357 ~ 35012867 (-)
G881953 NA non-coding downstream 51975 34687065 ~ 34687348 (-)
G881952 NA non-coding downstream 52947 34686160 ~ 34686376 (-)
G881950 NA non-coding downstream 56922 34682175 ~ 34682401 (-)
G881949 NA non-coding downstream 57357 34681520 ~ 34681966 (-)
G881947 NA non-coding downstream 59741 34679345 ~ 34679582 (-)
G881995 NA non-coding upstream 44953 34786086 ~ 34786287 (-)
G882012 NA non-coding upstream 66161 34807294 ~ 34807807 (-)
G882019 NA non-coding upstream 68133 34809266 ~ 34815933 (-)
G882031 NA non-coding upstream 93530 34834663 ~ 34834918 (-)
G882043 NA non-coding upstream 105202 34846335 ~ 34846847 (-)
G881778 NA other downstream 322062 34413063 ~ 34417261 (-)
LOC110533687 NA other downstream 766011 33939072 ~ 33973312 (-)
G880994 NA other downstream 1060484 33613325 ~ 33678839 (-)
G882578 NA other upstream 561781 35302914 ~ 35304055 (-)
G882539 NA other upstream 579681 35320814 ~ 35321706 (-)
G882631 NA other upstream 686116 35427249 ~ 35428208 (-)
G882971 rb1 other upstream 857184 35598317 ~ 35599085 (-)

Expression


Co-expression Network