G882176


Basic Information

Item Value
gene id G882176
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35071351 ~ 35073337 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1003772
tgaatgagtaagtgttaaTAATATTTGCTTTTATActaaatatatttataatatatagAATCCATTTAGAGTAAAGTACATAAAATACCCACAGCTTAAGCATTTCCCCTGATCTCTTAAAGAATCAACGTAGATTCATAGTATGTTCAGAGAAGTATTGTGAATTTTGGTAGGGAAAACAACAATACCAATAGATTCAACAACTTGTTGCCTTATTTTTGTCTTACTACCAGTTTAGTATGATACATAAAAGTCCCTAATGAGTTTgagtcctctagtacagtattGCAAAGCCAAAGATGACACAAAACTGGGACTGCTAAAGCATCACTCAGTGAAGTTCAATACTGGCTCAAGAACCACACAGCTATTGCTTGAAACCACAATAATAGTTCAGTATtatccactgcagccccatcccTACaaacgttcacacacacacacctttgcatacaaacacacatacccaAATCCATACCAATGAACATAAAATACATTAAAAACGTAGGTTGCGGACAGAGTAGGTCTAGTAAGAGAAAAGGGAACTATATTCAACTGGATAACATCCGCAAGATGAAGAAAACCTGACTTCCATTATAATATTCTTAcaactacatctctctctcttccaaatCCGCTATGTCCTCTTTATTACTGTGAATTCAAAGCCTTCATACTTCATCACCCCTCGACCCCCACATCTTAACAAGTCACCTCACTCCCTTCCACTGGTATATTTTACACACAACAAATTAACTGAACTCCCTTCTCCGAACAAGAACTGCACTAGAACAGCATATATATTGCAATATAACGGCAATATAACAGTAGAGATAAAAGTAAGAATACCAGTTAGGCTAATACCAAATACAGAAACCGTACAGATATCAAATCTTTGTAGCGATATTGACAAGAAACAAAGGTAGAAATATCTAAAGCCAGTTAGAAAGCCTCCTAAACGGTGAGGAAGTCCCATCTCCGAGATGTAGCAAGGGTATAATAAAGGAATAGAAGGTGTATAGCTAGAGCACAGCAGTGTGTTCTCTTTAACTTCTCTGGATTTACTAAGGAATAGAACAATAGTATGTTCACATCATAGATAGTCCATCTTCCTAGGAGGTTTTTTTTAAACCTACATCCCAAAAAACATCAAAATAACAAACATTAAATCAAGTTTTAATCAAACGACACTTCTTATTTTTAAACAATGAGTTGAATAATGATGTCATAGGGAATCAGAAGCTTAGCATAGTGAGTGAGCTTCTATGGTGAAGTGTTGCAACAATACTTCAAACCTCTAGGGTGTGCCAGTACAGTATATATCAGGTCCATGGTAACGCCCCAAATGGAGGTGTAATATACAGGTCTGCCAGTGACTTCAATCTACCCATGTTCTCTTCCATGTGAACATGTTAGACACTGGCTATTTACAATTCAATCTTGACTTATATTGGTTCAATCTTGCCTTCTTCCAAATGTATTTCACCAGTAAGGAATGTGTTTAACATAAGAAGGAACTAACTACAGTAGTTACGACTAAACACAGGTCCACCAAGTGACTGAGGTACAATAATACAGGAcaggtatatatacacagtagagtagagatgaTATTACATGAGAATCCTGTGGTGATGTCTCATAGTTAGCTACCATTTCAGAGGGAGCTCAGTCAGTTTAGGGGAGTCAGCAGGTGGCAGGTGAGAGACTTTGTCATGAAGACTTTAGGCTGGAATGGATTTACAGTAGGCTTGTGTGAGctgtatgtgtgtgatgtgtttgtgTTGAGTCTGACTGTGTGGTGTGTCCtcgtatggggggggggggggggggttgagtgtCTTTCACTTGGCCTGGTGGTTTCCATACACTGACTGACTACGGGACATAGTTGTATGGGACAATGTTGTTTCACCAGTTCATGATGCAGTTCCTGTTCAGGGTCATGAAGTAGACCTGGCTGCTGCCCCCGGAGCGCACCGAAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1003772 True 1987 lncRNA 0.39 1 35071351 35073337

Neighbor

gene id symbol gene type direction distance location
LOC110533726 LOC105023919 coding upstream 7887 35050938 ~ 35063464 (+)
LOC110533722 LOC106603594 coding upstream 96265 34971817 ~ 34975086 (+)
LOC110533719 LOC106603618 coding upstream 122075 34945666 ~ 34949276 (+)
LOC110533717 LOC106603590 coding upstream 329900 34722868 ~ 34741451 (+)
LOC110533716 LOC106603589 coding upstream 396474 34622408 ~ 34674877 (+)
gltpd2 LOC106603604 coding downstream 124614 35197951 ~ 35203782 (+)
mogat3b LOC106603399 coding downstream 234416 35307753 ~ 35321801 (+)
LOC118966749 NA coding downstream 284704 35358041 ~ 35362540 (+)
LOC110534898 LOC106603243 coding downstream 311133 35384470 ~ 35385650 (+)
LOC110534900 LOC106603243 coding downstream 335799 35409136 ~ 35410259 (+)
G882184 NA non-coding upstream 43651 35027378 ~ 35027700 (+)
G882183 NA non-coding upstream 44122 35026814 ~ 35027229 (+)
G882181 NA non-coding upstream 45992 35025033 ~ 35025359 (+)
G882163 LOC106603596 non-coding upstream 59872 35010382 ~ 35011479 (+)
G882162 NA non-coding upstream 62021 35009025 ~ 35009330 (+)
G882201 NA non-coding downstream 2004 35075341 ~ 35075549 (+)
G882203 NA non-coding downstream 2780 35076117 ~ 35076604 (+)
G882180 NA non-coding downstream 4014 35077351 ~ 35078624 (+)
G882204 NA non-coding downstream 5354 35078691 ~ 35079122 (+)
G882206 NA non-coding downstream 7283 35080620 ~ 35080971 (+)
G882013 NA other upstream 259822 34808602 ~ 34811529 (+)
G881536 NA other upstream 577250 34489820 ~ 34494101 (+)
LOC110534915 rps17 other upstream 582637 34486712 ~ 34488757 (+)
rnasekb rnasek other upstream 600973 34458769 ~ 34472268 (+)
G882202 NA other downstream 2261 35075598 ~ 35075967 (+)
G882225 NA other downstream 34125 35107462 ~ 35109391 (+)
G882265 NA other downstream 88011 35161348 ~ 35163506 (+)
G882300 NA other downstream 151760 35225097 ~ 35264333 (+)

Expression


Co-expression Network