G882214 (LOC106603600)


Basic Information

Item Value
gene id G882214
gene name LOC106603600
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35088731 ~ 35094643 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1003819
TGCTGCCATGGCAACCAGCTCACGGACATTCCACAGCCAGAGTGGCCTGCAGAGTAGGCTACGCCCACACCTCTCCACAATTGGCTGATTGTGCTCCTGCGCTTCTCGTGGTTGGTTACCTGCTCCCTCTCGGCCAgcctcctatcctcctccctcCTGATATCGTCAAGTCTCCGATGGGGGCCTTTTTCTTGCTGTCTCACCATCTCTCGCTCTTTTCTCTGCTCTTCCAGGCGGCGGCGCTGTTCTTTCTGCTCCTCGATGCGTTTCTGTCGGTCGTGCAGCAGCTGTCTCTTGTGTTCCTCTGGGTCTCGGCGCTGGGCGGCCAGCTGGGCCTGCTGTCTCTTCAGAGCCTCTGATCGCTCCTTGTTCTCCTGCTGCAGACGCAGGAAGTCCCGCCTCAACGTCGACTCACCAGGCACATTCAAGATGGAGG

Function

NR:

description
PREDICTED: misshapen-like kinase 1 isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1003819 True 436 lncRNA 0.59 2 35088731 35094643

Neighbor

gene id symbol gene type direction distance location
LOC110533726 LOC105023919 coding upstream 25267 35050938 ~ 35063464 (+)
LOC110533722 LOC106603594 coding upstream 113645 34971817 ~ 34975086 (+)
LOC110533719 LOC106603618 coding upstream 139455 34945666 ~ 34949276 (+)
LOC110533717 LOC106603590 coding upstream 347280 34722868 ~ 34741451 (+)
LOC110533716 LOC106603589 coding upstream 413854 34622408 ~ 34674877 (+)
gltpd2 LOC106603604 coding downstream 103308 35197951 ~ 35203782 (+)
mogat3b LOC106603399 coding downstream 213110 35307753 ~ 35321801 (+)
LOC118966749 NA coding downstream 263398 35358041 ~ 35362540 (+)
LOC110534898 LOC106603243 coding downstream 289827 35384470 ~ 35385650 (+)
LOC110534900 LOC106603243 coding downstream 314493 35409136 ~ 35410259 (+)
G882206 NA non-coding upstream 7760 35080620 ~ 35080971 (+)
G882204 NA non-coding upstream 9609 35078691 ~ 35079122 (+)
G882180 NA non-coding upstream 10107 35077351 ~ 35078624 (+)
G882203 NA non-coding upstream 12127 35076117 ~ 35076604 (+)
G882201 NA non-coding upstream 13182 35075341 ~ 35075549 (+)
G882217 NA non-coding downstream 587 35095230 ~ 35095516 (+)
G882218 NA non-coding downstream 1743 35096386 ~ 35096606 (+)
G882219 NA non-coding downstream 3350 35097993 ~ 35098570 (+)
G882222 NA non-coding downstream 9044 35103687 ~ 35104107 (+)
G882223 NA non-coding downstream 10169 35104812 ~ 35105103 (+)
G882202 NA other upstream 12764 35075598 ~ 35075967 (+)
G882013 NA other upstream 277202 34808602 ~ 34811529 (+)
G881536 NA other upstream 594630 34489820 ~ 34494101 (+)
LOC110534915 rps17 other upstream 600017 34486712 ~ 34488757 (+)
G882225 NA other downstream 12819 35107462 ~ 35109391 (+)
G882265 NA other downstream 66705 35161348 ~ 35163506 (+)
G882300 NA other downstream 130454 35225097 ~ 35264333 (+)
G882624 NA other downstream 320332 35414975 ~ 35416238 (+)

Expression


Co-expression Network