G882237


Basic Information

Item Value
gene id G882237
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35119017 ~ 35119972 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1003843
AGGTCGATGTCATCCAAGCTTCGTGTGGGGGCGTTTTCGGACATACTGGCAAAAGTAGTAAATTAGTTTAAAAAAGTAGCAGCGGGTAGAAAATCCAGGTGGCCCAATGTTTAATTTAGCGGTGTCCTGCACTGTCAGGTCCCGCGCAGACAGATATGGGGGTACCTTATGAGACTTGACTTGCTAACATAAACAACCAGACGCAAAATCGTCAAGGCGAAATGCAGTTCGCTAGCAAGCTAGTCCCATTGCGTTAGAGACCCAATATTGTGCTGCACTCTATGCGTTCATTTTGGCAATATTAATACGTATATGTTGCATGACAATTCGAACGAGGTGGTCATCTACATATACTTTGAATGTTTAACTACACAATACAATTATGTTTGTGAGATTAAACAAAAGTTAGAATAAGTAGCTAGCTAAGTTACCTGGCTAGGTAGCTAGCTGTTGGCTAAATAATAACAGCGCAATAATACGAAGGTGGTCTGCAGCAGAGCTGttaacgttatctagctagctacccacGCACAAatcaaaaataacatttatttagaATAAACTTGCATTCTAGCTGGCCGTAATTCGCGTCCTGCAGAGACTTAATGTTCCACAAATGACGTTGCAAGCAAATGGCGCGGTCAGTAGATCAtatgtagccagctagctacgtCGAATGTCCGACATTCGTTATCTGAACACAAACTTTCACTCCTTTCGCGTTGACACAGATCGCGCCTTACACTGCTTGTACCGACGGTGAAAAATGCAGTTTCTGTACGGATCCAATTGTACGAATTTGAGCTGGTTACGTACTTCTAAATATATACTTTAGTTAAGAGTATAGTTGATAACATCCAAGTAATTTCCCGACATACAGTCCATAAACTATTTAATCGCCATGTTTTGGTAACGTTAGCCCTGTTCGTCTGTGTGATCGGCTATGACGTCCCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1003843 True 956 lncRNA 0.42 1 35119017 35119972

Neighbor

gene id symbol gene type direction distance location
LOC110533726 LOC105023919 coding upstream 55553 35050938 ~ 35063464 (+)
LOC110533722 LOC106603594 coding upstream 143931 34971817 ~ 34975086 (+)
LOC110533719 LOC106603618 coding upstream 169741 34945666 ~ 34949276 (+)
LOC110533717 LOC106603590 coding upstream 377566 34722868 ~ 34741451 (+)
LOC110533716 LOC106603589 coding upstream 444140 34622408 ~ 34674877 (+)
gltpd2 LOC106603604 coding downstream 77979 35197951 ~ 35203782 (+)
mogat3b LOC106603399 coding downstream 187781 35307753 ~ 35321801 (+)
LOC118966749 NA coding downstream 238069 35358041 ~ 35362540 (+)
LOC110534898 LOC106603243 coding downstream 264498 35384470 ~ 35385650 (+)
LOC110534900 LOC106603243 coding downstream 289164 35409136 ~ 35410259 (+)
G882234 NA non-coding upstream 1489 35117304 ~ 35117528 (+)
G882232 NA non-coding upstream 2432 35116369 ~ 35116585 (+)
G882223 NA non-coding upstream 13914 35104812 ~ 35105103 (+)
G882222 NA non-coding upstream 14910 35103687 ~ 35104107 (+)
G882219 NA non-coding upstream 20447 35097993 ~ 35098570 (+)
G882236 NA non-coding downstream 313 35120285 ~ 35121216 (+)
G882264 NA non-coding downstream 40338 35160310 ~ 35160662 (+)
G882267 NA non-coding downstream 52015 35171987 ~ 35174824 (+)
G882271 NA non-coding downstream 59674 35179646 ~ 35179984 (+)
G882272 NA non-coding downstream 60062 35180034 ~ 35180331 (+)
G882225 NA other upstream 9626 35107462 ~ 35109391 (+)
G882202 NA other upstream 43050 35075598 ~ 35075967 (+)
G882013 NA other upstream 307488 34808602 ~ 34811529 (+)
G881536 NA other upstream 624916 34489820 ~ 34494101 (+)
G882265 NA other downstream 41376 35161348 ~ 35163506 (+)
G882300 NA other downstream 105125 35225097 ~ 35264333 (+)
G882624 NA other downstream 295003 35414975 ~ 35416238 (+)
LOC110533748 prps1 other downstream 562683 35674201 ~ 35686573 (+)

Expression


Co-expression Network