G882271


Basic Information

Item Value
gene id G882271
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35179646 ~ 35179984 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1003878
CAGATAGCATACAGTATGAACACGTCATAAGCAATGGTAACatttagaattgcaggaaatttgctttaactGCAAAATGTTCCCTCAGccttatggcaaaatgtgttgaatagcattttaaaactgcacatttgtctctctgccccatggcaaaatgtgttgaaatgtAGGAATTAAGCCGATTTCCAAAAGAACAGGAACCAGCCCGCCCTGAAAAGAAAAATGATTAGCCAAACATAGGTAGTAATGCTACTGACACAGAACATAAGCAGTACACTGTAGTACAGCGTTTCTCAAATGTTACTATACCAGTGACCGGCAAAACATGGTCCTTTAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1003878 True 339 lncRNA 0.39 1 35179646 35179984

Neighbor

gene id symbol gene type direction distance location
LOC110533726 LOC105023919 coding upstream 116182 35050938 ~ 35063464 (+)
LOC110533722 LOC106603594 coding upstream 204560 34971817 ~ 34975086 (+)
LOC110533719 LOC106603618 coding upstream 230370 34945666 ~ 34949276 (+)
LOC110533717 LOC106603590 coding upstream 438195 34722868 ~ 34741451 (+)
LOC110533716 LOC106603589 coding upstream 504769 34622408 ~ 34674877 (+)
gltpd2 LOC106603604 coding downstream 17967 35197951 ~ 35203782 (+)
mogat3b LOC106603399 coding downstream 127769 35307753 ~ 35321801 (+)
LOC118966749 NA coding downstream 178057 35358041 ~ 35362540 (+)
LOC110534898 LOC106603243 coding downstream 204486 35384470 ~ 35385650 (+)
LOC110534900 LOC106603243 coding downstream 229152 35409136 ~ 35410259 (+)
G882267 NA non-coding upstream 4822 35171987 ~ 35174824 (+)
G882264 NA non-coding upstream 18984 35160310 ~ 35160662 (+)
G882236 NA non-coding upstream 58430 35120285 ~ 35121216 (+)
G882237 NA non-coding upstream 59674 35119017 ~ 35119972 (+)
G882234 NA non-coding upstream 62118 35117304 ~ 35117528 (+)
G882272 NA non-coding downstream 50 35180034 ~ 35180331 (+)
G882293 LOC106603606 non-coding downstream 37981 35217965 ~ 35218391 (+)
G882299 NA non-coding downstream 45672 35225656 ~ 35228524 (+)
G882301 NA non-coding downstream 48882 35228866 ~ 35234190 (+)
G882300 NA non-coding downstream 55336 35225097 ~ 35264333 (+)
G882265 NA other upstream 16140 35161348 ~ 35163506 (+)
G882225 NA other upstream 70255 35107462 ~ 35109391 (+)
G882202 NA other upstream 103679 35075598 ~ 35075967 (+)
G882013 NA other upstream 368117 34808602 ~ 34811529 (+)
G882624 NA other downstream 234991 35414975 ~ 35416238 (+)
LOC110533748 prps1 other downstream 502671 35674201 ~ 35686573 (+)
G883473 om-i other downstream 1113330 36292302 ~ 36295572 (+)

Expression


Co-expression Network