G882385


Basic Information

Item Value
gene id G882385
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35208192 ~ 35277138 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1004026
ctctctctctctctctctctctctctctctcacacacacacacatgaatcATCCATGCTTTCTGTTAAAATATGTAAGGTTAGGAAAGACTATGGTATGTGCTTAGTTCCACAGTTACTTTACACTACAATATTATCAGGGTTTTATCCATGTGACCCACATATTGCCATGTTGTACCACAAGCCATTTTTCCTCATGAGCCCATTCCATTCACAATTCAATCTACAAGTAAATGTGTATACTATCCATGGTGTGTGTAGCCACGCACTTACAGATATGTGGATATATTCCTGTTGGCAAAAGTCATGCTTTTCTTTGCTACATACAAGATTAGTCATGACACATTCCCTCCAACCAAAGGTATTCATGAGAATTTTATTAGTATGGAAAAAACGTGCTGCAACTGCCAGACCACAGATCTTTCTGAGAGAAAGGATTTAATTTAAAACATGTTTCAGAATGATGTGTGAATGTCATTTCATGAGCAGTCCTATTCTTACATAATGATACACATAGAAGGAGCATGTTTCACTAAATGACAACAGTGCCTCTTGGTGGACAGATCGTGTTGTTCCCCAGTGTCACTTGTTATGTAATACTATCTCCATATATCCGTTTTTTAAGTGATCATTTGGAACATATTTATTTGCCTGTGTGGCTGTATGTTTTTATTCTCGGAAAGACTGCAACAAATGTatagtaacaaaaacaataaagagctTGAGGAAGAAGACAGAAAGAACATGGAAATATTACGTTCACATATAGATATACTTATGTTTGCTAATGCGCGTCTTCAAGATTGAACAATAGAAACATAACGGTTTTGTTTTCAAAAAGAGATAAAGTATTTGTATTGTTATTTTGTTGAAAAGAGGAAATAATGTATTAGCTTTGTATTGTATTAAGACAGGGGTGCTACCTGGTAGGTTTTCGACCTGTAATCTCAGAATTCTGAGTGAGACTGAAGAAAACTTGACAATTAAACACATGCCAAGTAGCATTTTCTTTCTTCTAAGTCTGACCCCTACTTTCTCTGTCTTGTTTTCAACCTTGCAGTATTGAATGGTTGCCCTGTTGAAACGCTTTCTCAGTCATTGTCTACTGGCTACTCTTTTAGGTGAACAGTGCATGTCTTTATATGGGCACCAAGATGATGAGATGAAGAAGGGCATCCTCTTCTGGTATTGGTTTGATCAGTTACACTGATTCAATAGAAAGCTTCATATTTACAGTAACTGCCAAGGATTTATCCCCAAACAGCACAATACTTGCCTGTGACCACTGCATGTGGAAACTAGTGTGAACTAGCAAGACAGCTTTTCACTAAAGGTCCTCCTGGAAAATAATATAAAAACGTTATGTCCCTGAAAATCTTGAATCAGACAGTTTATTAAAAACGTATCTAAGGCAGAACTCTTTTGAAACACTTTGGGATAGTCTCTCACC
>TU1004027
cagaatgtGTCTGTTTGTATAACAAAATTCAATTTGCAAGAAAAATGTTATACTGTAGGTTGGGAAGTTGCATATGCAATGTGCAATATTCATTAGAGTGACAAATCATATTCATTCTTCACATTAAACAGGACTCTTTTGCTATAAACACTTGAATTGCACATCAGTCATGAATTGGATCAGTCTCCCATAACATGAATATACATTGTTCTTACAGTGCACACACATGGTTTGTGTTCACAGCTGTGTCCCTCCAGCTCAAAAGGGTTAGGTCTTTTTGCATGTACATCACATATATTTCATGTCTCtggaaaggtaaaaaaaataagatgctattttattttgtattgatTTGCGCTGGTTTGTGTTTTTCTTGTGAAGACGAGATGCTTATGGTTCTGTGGAGAAGGACAAATAGAGAGTTTGtttttgtttctatgtttgtttAAACTTTTGTACATGGCTTGTTACTGCTGTGATAGCCTTCAAACTGAGATGCACTGACTCCAACATTTCTGATTACATTGACCAGAATGTCTATAGGGCTGTTTTGGTAATACCGGTCATTTGTTTGATTTTTGTAGGATTCTCTGCCATTCCATTGCTTTAAACAAGGGAGTACAACAGACCAACCAACCTTGGAGTTGGAGGCTGTACTCTAACTATAAACATTTACAATTGAGCGTTTAGGAATTTGCTGTAGCATGGTGGTCAATGTGCTGTGCATAGATACCCTGGATGTGCTGCTGACTTGATTTGGTACACATAATAAGAAAAGCCCATCCTTCAGTTGAGGAATCTGGATCTGAGCGAGCGCTGCTGAACCCAGGCACCTCGCCTTGGCTGATCCTGCTATGACATCATAGCAACACTTTCAGAACACTAGCATCTGTTCATTCAAATGAAGGATTGGGTTGACTTTTAGGGCCTATTATTTTCTGTCAGTATTGTATATCAATACATTCTCCTTCATTTGGATTGAAGTGGTGCCTCTGTAATATCATCATCAAGACTGACAGTAATACTATGTTTTATTTGATAGATGTGCTGTATAATACATGTTGAGGTATATAGGAGTGATTGAACAAAGTAAATTGACTCCATGCTAAACATGCATGCTGCATGTAGCCTACCAATAGTCCTTGTTTTTGAGCAGTGCAAGTGCTACGTATTCCTTATCATTCCTGCTCCACTCAGTCTGTCACGCTTCATTTCACTGTAATCTCTTAATCTGGTAAAATAATCCAAAACAGGTCCCCTTCTTTATCCTCTCTTTGTAGTTCCACCTTGTGTCAACCCTCTGTcttttgctctctctctctctctctctctctctctctctctctctcacacacacatgaatcATCCATGCTTTCTGTTAAAATATGTAAGGTTAGGAAAGACTATGGTATGTGCTTAGTTCCACAGTTACTTTACACTACAATATTATCAGGGTTTTATCCATGTGACCCACATATTGCCATGTTGTACCACAAGCCATTTTTCCTCATGAGCCCATTCCATTCACAATTCAATCTACAAGTAAATGTGTATACTATCCATGGTGTGTGTAGCCACGCACTTACAGATATGTGGATATATTCCTGTTGGCAAAAGTCATGCTTTTCTTTGCTACATACAAGATTAGTCATGACACATTCCCTCCAACCAAAGGTATTCATGAGAATTTTATTAGTATGGAAAAAACGTGCTGCAACTGCCAGACCACAGATCTTTCTGAGAGAAAGGATTTAATTTAAAACATGTTTCAGAATGATGTGTGAATGTCATTTCATGAGCAGTCCTATTCTTACATAATGATACACATAGAAGGAGCATGTTTCACTAAATGACAACAGTGCCTCTTGGTGGACAGATCGTGTTGTTCCCCAGTGTCACTTGTTATGTAATACTATCTCCATATATCCGTTTTTTAAGTGATCATTTGGAACATATTTATTTGCCTGTGTGGCTGTATGTTTTTATTCTCGGAAAGACTGCAACAAATGTatagtaacaaaaacaataaagagctTGAGGAAGAAGACAGAAAGAACATGGAAATATTACGTTCACATATAGATATACTTATGTTTGCTAATGCGCGTCTTCAAGATTGAACAATAGAAACATAACGGTTTTGTTTTCAAAAAGAGATAAAGTATTTGTATTGTTATTTTGTTGAAAAGAGGAAATAATGTATTAGCTTTGTATTGTATTAAGACAGGGGTGCTACCTGGTAGGTTTTCGACCTGTAATCTCAGAATTCTGAGTGAGACTGAAGAAAACTTGACAATTAAACACATGCCAAGTAGCATTTTCTTTCTTCTAAGTCTGACCCCTACTTTCTCTGTCTTGTTTTCAACCTTGCAGTATTGAATGGTTGCCCTGTTGAAACGCTTTCTCAGTCATTGTCTACTGGCTACTCTTTTAGGTGAACAGTGCATGTCTTTATATGGGCACCAAGATGATGAGATGAAGAAGGGCATCCTCTTCTGGTATTGGTTTGATCAGTTACACTGATTCAATAGAAAGCTTCATATTTACAGTAACTGCCAAGGATTTATCCCCAAACAGCACAATACTTGCCTGTGACCACTGCATGTGGAAACTAGTGTGAACTAGCAAGACAGCTTTTCACTAAAGGTCCTCCTGGAAAATAATATAAAAACGTTATGTCCCTGAAAATCTTGAATCAGACAGTTTATTAAAAACGTATCTAAGGCAGAACTCTTTTGAAACACTTTGGGATAGTCTCTCACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1004026 False 1449 lncRNA 0.37 2 35208192 35277138
TU1004027 True 2763 lncRNA 0.38 2 35208192 35211040

Neighbor

gene id symbol gene type direction distance location
LOC110534897 LOC106603603 coding downstream 36050 35163598 ~ 35172142 (-)
LOC118966630 NA coding downstream 48139 35159544 ~ 35160053 (-)
LOC110533729 LOC106603602 coding downstream 48853 35123145 ~ 35159339 (-)
LOC110533727 LOC106603600 coding downstream 88030 35072517 ~ 35120162 (-)
LOC110533725 LOC106603599 coding downstream 163565 35041772 ~ 35044627 (-)
LOC110533734 LOC106603397 coding upstream 53594 35330732 ~ 35341314 (-)
LOC110533735 rn167 coding upstream 67455 35344593 ~ 35357905 (-)
defbl1 NA coding upstream 92976 35367515 ~ 35370773 (-)
LOC110533736 LOC106603396 coding upstream 154486 35431624 ~ 35483763 (-)
LOC110533740 rn121 coding upstream 229040 35506178 ~ 35517246 (-)
G882517 NA non-coding downstream 25590 35182322 ~ 35182602 (-)
G882514 NA non-coding downstream 28339 35179637 ~ 35179853 (-)
G882513 NA non-coding downstream 28655 35179312 ~ 35179537 (-)
G882511 NA non-coding downstream 29688 35177845 ~ 35178504 (-)
G882506 NA non-coding downstream 44604 35161292 ~ 35163588 (-)
G882573 NA non-coding upstream 20244 35297382 ~ 35297615 (-)
G882579 NA non-coding upstream 27664 35304802 ~ 35305063 (-)
G882580 NA non-coding upstream 28117 35305255 ~ 35305986 (-)
G882535 NA non-coding upstream 41473 35318611 ~ 35320695 (-)
LOC110533718 LOC106603592 other downstream 314264 34891059 ~ 34893957 (-)
LOC110534894 gpr119 other downstream 609517 34597247 ~ 34599007 (-)
LOC110533714 rbmx2 other downstream 612010 34589717 ~ 34596263 (-)
G881778 NA other downstream 790931 34413063 ~ 34417261 (-)
LOC110533687 NA other downstream 1234880 33939072 ~ 33973312 (-)
G882578 NA other upstream 25776 35302914 ~ 35304055 (-)
G882539 NA other upstream 43676 35320814 ~ 35321706 (-)
G882631 NA other upstream 150111 35427249 ~ 35428208 (-)
G882971 rb1 other upstream 321179 35598317 ~ 35599085 (-)
G883128 NA other upstream 603386 35880524 ~ 35880951 (-)

Expression


Co-expression Network