G882293 (LOC106603606)


Basic Information

Item Value
gene id G882293
gene name LOC106603606
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35217965 ~ 35218391 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1003903
CCCGGTTCAGCTTGATGATGATGCATGGCTTGCCCGCCTGGTATCCATAGGTACGGTCATTGAGGCCAGAGCATTCTTGTAGAAGGGATCGGTTGAACTGGCAGGAGCGCTTGGGGATGTTCTTCACATCACCGCTGTCTGCCTGAATAAAATACTGGTCCGGTGTGCACTTGTCATTCTTTTCAGCCTGCAGAGAGTTGTTGTAGACTGGATAGGAGAGAAATACAGTTTAACATGTGGTTTTCCCCAATGGAAattacattagagagagagagagaggggcgggcgggcgggcgggcaggcaggcaggcaggcaggctcacaGGAGAGGAAGTTGTCCAGGGTTTTGGTATACATGTCCCAGCTCTCAGTGTTGTGGGTGTTGATCTCCATGGTGTCTCCC

Function

NR:

description
sodium/potassium-transporting ATPase subunit beta-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1003903 True 403 lncRNA 0.53 2 35217965 35218391

Neighbor

gene id symbol gene type direction distance location
gltpd2 LOC106603604 coding upstream 14183 35197951 ~ 35203782 (+)
LOC110533726 LOC105023919 coding upstream 154501 35050938 ~ 35063464 (+)
LOC110533722 LOC106603594 coding upstream 242879 34971817 ~ 34975086 (+)
LOC110533719 LOC106603618 coding upstream 268689 34945666 ~ 34949276 (+)
LOC110533717 LOC106603590 coding upstream 476514 34722868 ~ 34741451 (+)
mogat3b LOC106603399 coding downstream 89362 35307753 ~ 35321801 (+)
LOC118966749 NA coding downstream 139650 35358041 ~ 35362540 (+)
LOC110534898 LOC106603243 coding downstream 166079 35384470 ~ 35385650 (+)
LOC110534900 LOC106603243 coding downstream 190745 35409136 ~ 35410259 (+)
nlrc3l1 LOC106603395 coding downstream 277809 35496200 ~ 35500355 (+)
G882272 NA non-coding upstream 37634 35180034 ~ 35180331 (+)
G882271 NA non-coding upstream 37981 35179646 ~ 35179984 (+)
G882267 NA non-coding upstream 43141 35171987 ~ 35174824 (+)
G882264 NA non-coding upstream 57303 35160310 ~ 35160662 (+)
G882236 NA non-coding upstream 96749 35120285 ~ 35121216 (+)
G882299 NA non-coding downstream 7265 35225656 ~ 35228524 (+)
G882301 NA non-coding downstream 10475 35228866 ~ 35234190 (+)
G882300 NA non-coding downstream 16929 35225097 ~ 35264333 (+)
G882335 NA non-coding downstream 73290 35291681 ~ 35292311 (+)
G882336 NA non-coding downstream 76204 35294595 ~ 35295398 (+)
G882265 NA other upstream 54459 35161348 ~ 35163506 (+)
G882225 NA other upstream 108574 35107462 ~ 35109391 (+)
G882202 NA other upstream 141998 35075598 ~ 35075967 (+)
G882013 NA other upstream 406436 34808602 ~ 34811529 (+)
LOC110533716 LOC106603589 other upstream 584058 34622408 ~ 34674877 (+)
G882624 NA other downstream 196584 35414975 ~ 35416238 (+)
LOC110533748 prps1 other downstream 464264 35674201 ~ 35686573 (+)
G883473 om-i other downstream 1074923 36292302 ~ 36295572 (+)

Expression


Co-expression Network