G882348


Basic Information

Item Value
gene id G882348
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35330751 ~ 35331709 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1003979
tatatattttaaaaaatgccaTTGtcatcaaatgttttttattgaGGTTATACATTCTTTTAATTCAAGTTGGTTACAATTGTACTGAGACTTTGCGCTGcagacactgaacaaaaaaaatacGAGGCTAATTCATCACTTAACATAAGGGGATAAGAAGGGGAAATTACAATGATTAGAAACAAAAGAGATTAAAATAAATGGAGTCTAGAAGAAGTCCATGTCATCAGGTGCATCCAGGTCACGGTATTCAATGATGTTGCGTGGATCTCCCCGAGACATTCTGTTGTTGCGGGGTTTACCAGGGTAGCCACCACCCTGTCCACGGAAGTTGTCATAGTTACCCCGA

Function

NR:

description
serrate RNA effector molecule homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1003979 True 349 lncRNA 0.38 2 35330751 35331709

Neighbor

gene id symbol gene type direction distance location
mogat3b LOC106603399 coding upstream 11325 35307753 ~ 35321801 (+)
gltpd2 LOC106603604 coding upstream 126969 35197951 ~ 35203782 (+)
LOC110533726 LOC105023919 coding upstream 267287 35050938 ~ 35063464 (+)
LOC110533722 LOC106603594 coding upstream 355665 34971817 ~ 34975086 (+)
LOC110533719 LOC106603618 coding upstream 381475 34945666 ~ 34949276 (+)
LOC118966749 NA coding downstream 26332 35358041 ~ 35362540 (+)
LOC110534898 LOC106603243 coding downstream 52761 35384470 ~ 35385650 (+)
LOC110534900 LOC106603243 coding downstream 77427 35409136 ~ 35410259 (+)
nlrc3l1 LOC106603395 coding downstream 164491 35496200 ~ 35500355 (+)
zgc:110224 LOC106603393 coding downstream 185576 35517285 ~ 35521595 (+)
G882344 NA non-coding upstream 2107 35328094 ~ 35328644 (+)
G882336 NA non-coding upstream 35353 35294595 ~ 35295398 (+)
G882335 NA non-coding upstream 38440 35291681 ~ 35292311 (+)
G882300 NA non-coding upstream 66418 35225097 ~ 35264333 (+)
G882352 NA non-coding downstream 10406 35342115 ~ 35342686 (+)
G882353 NA non-coding downstream 11266 35342975 ~ 35343227 (+)
G882615 NA non-coding downstream 74918 35406627 ~ 35406870 (+)
G882617 NA non-coding downstream 77086 35408795 ~ 35409073 (+)
G882626 NA non-coding downstream 88522 35420231 ~ 35420447 (+)
G882265 NA other upstream 167245 35161348 ~ 35163506 (+)
G882225 NA other upstream 221360 35107462 ~ 35109391 (+)
G882202 NA other upstream 254784 35075598 ~ 35075967 (+)
G882624 NA other downstream 83266 35414975 ~ 35416238 (+)
LOC110533748 prps1 other downstream 350946 35674201 ~ 35686573 (+)
G883473 om-i other downstream 961605 36292302 ~ 36295572 (+)
LOC110533788 NA other downstream 1467676 36799376 ~ 36801589 (+)
G883966 NA other downstream 1517937 36849646 ~ 36851153 (+)

Expression


Co-expression Network