G882352


Basic Information

Item Value
gene id G882352
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35342115 ~ 35342686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1003986
GGAAAACACAATACAAACAGTCTGAAACCATCATTTGTATTATACATGAATTACAGTACAagtgtttatttcagcttttaatggAACAAAGGGTCCCCTAAAACAGTGATGTTCCTGTAGATAACATATTTTTATTCAGCACAAAGGCAAATACATTTGGTCACGTTCCTCCCTGTCCAGTTTTTAAGGGAACTCTTTGGAAACAAGCAAAAAATATGATATCAATTAGAATAGTAAGCGGGAGACACAAGAGAGGGGGAAGGTGATGATCCAGGCATCCTTTCCCACAACAGACAGTAAGAAATATCAGCTATGTTGTATCAGGTGTAATGAACATTGAAGGTTTTAGATCattggaggttatatacagtggggcaaaaaagtatttagtcagtcaccaattgtgcaagttctcccacttaaaaagatgaggcctgtaattttcatcataggtacacttcaactatgacagacaaaatgagaaaaaaaaatccagaaaatcacattgtaggatttttaatgaatttatttgcaaattatggtggaaaataagtatttggtcacctacaaac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1003986 True 572 lncRNA 0.35 1 35342115 35342686

Neighbor

gene id symbol gene type direction distance location
mogat3b LOC106603399 coding upstream 22689 35307753 ~ 35321801 (+)
gltpd2 LOC106603604 coding upstream 138333 35197951 ~ 35203782 (+)
LOC110533726 LOC105023919 coding upstream 278651 35050938 ~ 35063464 (+)
LOC110533722 LOC106603594 coding upstream 367029 34971817 ~ 34975086 (+)
LOC110533719 LOC106603618 coding upstream 392839 34945666 ~ 34949276 (+)
LOC118966749 NA coding downstream 15355 35358041 ~ 35362540 (+)
LOC110534898 LOC106603243 coding downstream 41784 35384470 ~ 35385650 (+)
LOC110534900 LOC106603243 coding downstream 66450 35409136 ~ 35410259 (+)
nlrc3l1 LOC106603395 coding downstream 153514 35496200 ~ 35500355 (+)
zgc:110224 LOC106603393 coding downstream 174599 35517285 ~ 35521595 (+)
G882348 NA non-coding upstream 10406 35330751 ~ 35331709 (+)
G882344 NA non-coding upstream 13471 35328094 ~ 35328644 (+)
G882336 NA non-coding upstream 46717 35294595 ~ 35295398 (+)
G882335 NA non-coding upstream 49804 35291681 ~ 35292311 (+)
G882353 NA non-coding downstream 289 35342975 ~ 35343227 (+)
G882615 NA non-coding downstream 63941 35406627 ~ 35406870 (+)
G882617 NA non-coding downstream 66109 35408795 ~ 35409073 (+)
G882626 NA non-coding downstream 77545 35420231 ~ 35420447 (+)
G882700 rir1 non-coding downstream 187280 35529966 ~ 35532747 (+)
G882300 NA other upstream 106890 35225097 ~ 35264333 (+)
G882265 NA other upstream 178609 35161348 ~ 35163506 (+)
G882225 NA other upstream 232724 35107462 ~ 35109391 (+)
G882202 NA other upstream 266148 35075598 ~ 35075967 (+)
G882624 NA other downstream 72289 35414975 ~ 35416238 (+)
LOC110533748 prps1 other downstream 339969 35674201 ~ 35686573 (+)
G883473 om-i other downstream 950628 36292302 ~ 36295572 (+)
LOC110533788 NA other downstream 1456699 36799376 ~ 36801589 (+)
G883966 NA other downstream 1506960 36849646 ~ 36851153 (+)

Expression


Co-expression Network