G882828



Basic Information


Item Value
gene id G882828
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35818068 ~ 35869469 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1004533
TTGACAGtttccatcatttatgtcaaCATATTTGAACTGTGAATAACATTTGACCCCACGTATTGCTGTGCATTATATTACCCAAATGGACAACCTCACTGGAAGTTTTGTTTTACAATGACAATGAAATGAAGCACAATATTTTAATACCTTGGGTTTAAAATGGCTTTGATTAAGTTTAATTGCTCAATTCAAAATGAACACAGCAACCCTGTGGTTTAAAAGCAGAGAGCATTAATACATGTGGAGAATGAAAACGACTGATCTTAGAACTAGCACCTCCACAGAATTGGGTTTCCTTTCACCCTCCACACGGTAATCATTTAAAAGGACAAACAACACATACTTATACATCAAGAGTGAGTGCAAAAAAAAGATGCCATAAGTCCTTTGACACACTTAGACAAGAGAGACTCTCACATTTCACTTGAATGTACAGCACTTTGGCACATTCAGCTGTTTGCTTTGGTTACAGTAACGGACAGCTCATTTACATTCACAATCTAAAGCAAAAGCAGCTAGATCATGTTCACTATCTATATAGATATCAGTAAGCGAGGGGACTGGGGTGTAATTCTTAGTTCTGATAAGCATGGAGAGCAGTCATCTCTTTCAGTCACTCAGATTTAGAGGGCTGAATGGAGTCCACATAACACAAGCTGACAATCATGTCAGGGACACTTGCAAACCAAAACCAGAGACGCTACATCCAATGTAAAAGAAAAGGAGCAACAGACATCAGAGAGTCATCTTCCTGGACTGAGAACCGAGGGGATAAGACTGGTGAGCAGGAGGGTGGGAGGGGCTCGAAGTTATGATgaccagggggaggggcttgaAGTTATGATGCCCAGGAGTTCTATTCATCTCTTAGGCTGTTGTTGAAGTGATAAATCAGATGGTCAAGATGAACCATGTGCCAGTTAGCAAAGCCCTCCAGGGAAGCAGCCAGCAGTAGGTAGGGGAATCAGGCTGCAGGCGTGTCTGAGGGGATGGATGAATGTTCAGTAGTGTGATGTGTAACGGCTCTCCTCAGGCCCAGTCTATGGGCGGATGAAGACTTGACAGGGCACCGTTTTTAACAGCGCAGCCCTTTTCTGCCCAGGAACCGCAGCACTGCATAGTTATAGGTGctctgtcaagttgcaggatgcatgttttggaatcattttattctgtacagatgtctttcttttcactctgtcatttcaggttagtattttggagtaaatacaatgttgatgatccatcctcagttttctcctatcccagccattaaactctaactgttttaaagtcaccattggcatcatggtgaaatccctgagtggtttccttcctctatggcaactgagttaggaagaatgcctatatctttgtagtgactgggtgtattgatacaccatccaaagtgtaattaataacttcaccatgctcaaagggatatttaatatCTGTTTTTTATGTATCTACCAATTTCTTtgcgaggtattggaaaacctccctggtctttgtggttgaatctgggtTTGATATTCACCGCTCAACTGAGGGaacttacaattatctgtatgtgtggggtacagagatgaggtagtctatcaaaaatcatgttaaagactgttgcacacagagtccgtgcaacttatgtgacttgttaaacacatttttactcctgaacttttttaggtttgccataacag
>TU1004534
GAACTGTGAATAACATTTGACCCCACGTATTGCTGTGCATTATATTACCCAAATGGACAACCTCACTGGAAGTTTTGTTTTACAATGACAATGAAATGAAGCACAATATTTTAATACCTTGGGTTTAAAATGGCTTTGATTAAGTTTAATTGCTCAATTCAAAATGAACACAGCAACCCTGTGGTTTAAAAGCAGAGAGCATTAATACATGTGGAGAATGAAAACGACTGATCTTAGAACTAGCACCTCCACAGAATTGGGTTTCCTTTCACCCTCCACACGGTAATCATTTAAAAGGACAAACAACACATACTTATACATCAAGAGTGAGTGCAAAAAAAAGATGCCATAAGTCCTTTGACACACTTAGACAAGAGAGACTCTCACATTTCACTTGAATGTACAGCACTTTGGCACATTCAGCTGTTTGCTTTGGTTACAGTAACGGACAGCTCATTTACATTCACAATCTAAAGCAAAAGCAGCTAGATCATGTTCACTATCTATATAGATATCAGTAAGCGAGGGGACTGGGGTGTAATTCTTAGTTCTGATAAGCATGGAGAGCAGTCATCTCTTTCAGTCACTCAGATTTAGAGGGCTGAATGGAGTCCACATAACACAAGCTGACAATCATGTCAGGGACACTTGCAAACCAAAACCAGAGACGCTACATCCAATGTAAAAGAAAAGGAGCAACAGACATCAGAGAGTCATCTTCCTGGACTGAGAACCGAGGGGATAAGACTGGTGAGCAGGAGGGTGGGAGGGGCTCGAAGTTATGATgaccagggggaggggcttgaAGTTATGATGCCCAGGAGTTCTATTCATCTCTTAGGCTGTTGTTGAAGTGATAAATCAGATGGTCAAGATGAACCATGTGCCAGTTAGCAAAGCCCTCCAGGGAAGCAGCCAGCAGTAGGTAGGGGAATCAGGCTGCAGGCGTGTCTGAGGGGATGGATGAATGTTCAGTAGTGTGATGTGTAACGGCTCTCCTCAGGCCCAGTCTATGGGCGGATGAAGACTTGACAGGGCACCGTTTTTAACAGCGCAGCCCTTTTCTGCCCAGGAACCGCAGCACTGCATAGTTATAGGTGGTAGCTACCACATACAGAAACAGCCAAGAGAGCAATCCCTGCACCAGCAAAGGCAGCGATGTATAGGTCATAGGTGACAAAGAaCTTTTGTTTTGCAGATGGATGCCAAGGTCATTCCACAAGCCTTACCTGGCATTGCATTCCAAGGCAGCAGACCTAATGAGAAGCTTGTCTCATTAATGTGAAATtaaaaactgtacattttaaatgtaaaaaaaataaaaagtaatactaACATACGGTGGCCCGGCTAGCTCAATCATAAGCTAAACGTACCATACTGCCGAGCATCCATGCAGATCCAGCCGTGCTGGTTGATGCTGGGTGTCGTCTCAGCCAGGATGTTGATGTTGTGGCAGGTCTGTGCCAtattaaagaagaagaagacgggtATGGCTGTGAAGGCAAACACCGCCAGCCAGATCACTGCCAGGACGTATGTCACAATGATGAACTGTGGAGCAGCAAGCAGAGCCGGTCACAGGAAGTTATTGGTCAATCTCCAGGGGGATACAGGATGTGACACAACATGTCCTATAAGGCTTCATTACTGCAGTCATACAACACTATAGAGGATAAATAATCTAACAGGAGCATAATATCCCTGTAGCAATACTACAGGGATTCATGGATAATTATCTATAAATTGTTTTTGGATTAATTCTCAACCAGTGGGTAGATTACAAGCTAGAGTAGGCTATAGTGCCAATATTCTTTTAGCGACCTAAGAAGGAGGTGATgtaattccctctctctctcctcccttcctccctactCACCGTCAGACTAAGGCAGCGGCCACATCTGGTGCTCCGGAACTCTCCGAAGGTCTGCTTGACAGCGCTGGTGGTGTAGAATCCCTCGGCCAGCAGCAGGATGCAGTAGAGGAAGAAGAAAGAGGCCAGGCCATAGATCACGTACTGGAAGTACTTGATACTGGGAGACAAGGACAGGTCATAATAAGGAAAGGTCAGAGATTCCATGGTGACAAAAGGTGCTGTTGAGAGGTGTTTTCTCTTAACCTATCTTAAGGAAGGgttaccaatactactactactgctgcaagAGCCTTTACATTTCTGTTGCTTGATTTGCACAACTTATCTATAAATACAAACAATTAAATTAGGTTATTGCACTTAAACAGAAAAGTTTTAAAGAGTCACTCACAACGAGGCCAGGATAACATAGTCTTGTATGTTACGAACAAAGTAAGTCTCGACGAGCACCTCGGTGTGTGCCAGTGCCTCGTGCCCGCAGCCACAGAACAGTGCCATGCCGGTGAAGCAGAGCAGAGTGGAAACCAGGGAGGGGTAGGGCACTGCCCCCAGGCATCGGATACAGCAATCATAACAACCTGGTGAGGGGGCATAATACATCAACACACTGGcggcacacaccaacacacagcaCATCTACGACAACGTCCAGACATCTCTCAGTCACCCTGCTTGGGGAGCTGTTAAACAGAAAGACTCCACTGCTTCTGCCAAAATTCCAACAACACCCACTATCAACTTCCATCAACAGGCATGAAAGCAACAGAAAAATTACAGCGAAAAACAACAGCGAAACCAAGTGCAGTGTATCCAATCAAACAATGTTAAAGTGTCTATACAAAACCAGCCGCCACTGACTTCACAGCATTCTCATACACTTCCTCCAATGTAAGCTGGGGAAGCAGATAACAAACATCCAGACTGTTAATGGCTGTATTGATATAGGAATCAGAGAAAGAGATGCACCTAGGGCTTTGCAAAGCCAAGGCTGTCTGACCGGAAACATTTGTTCCTTTCGATCTTGTGCTCCTCAACAACAAGCAAAGAGTTTATGAATCAGTGATGCTAAAGGCTCAGCTGCAGGATATTTTCACCAAAAAACTGCTCTGTCTGCAATGGTTTCATCCATGTGTAAAAGCTCCTCAGCTCCAGCCAACGCCTCACAGCTCAGCCCCTCTACTCTCCAGAGTTCATCCCTCTTTCTCCACCAACCGCCAT

Function


NR:

description
myelin proteolipid protein isoform X1

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1004533 False 1703 lncRNA 0.41 2 35818068 35869469
TU1004534 True 3097 lncRNA 0.45 3 35818101 35821887

Neighbor


gene id symbol gene type direction distance location
LOC110533751 LOC106603389 coding upstream 113995 35697166 ~ 35704073 (+)
LOC110533748 prps1 coding upstream 131753 35674201 ~ 35686573 (+)
LOC110533745 LOC106603391 coding upstream 156609 35627608 ~ 35661459 (+)
rb1 rb1 coding upstream 218111 35557807 ~ 35599957 (+)
slc6a7 sc6a7 coding upstream 260811 35548839 ~ 35557257 (+)
LOC110533760 LOC106603380 coding downstream 17666 35887135 ~ 35989671 (+)
LOC110533766 LOC106603376 coding downstream 256611 36126080 ~ 36138679 (+)
LOC110533099 pde2a coding downstream 272200 36141669 ~ 36183062 (+)
LOC110533767 mtmr2 coding downstream 313766 36183235 ~ 36194217 (+)
fam76b LOC106603374 coding downstream 325105 36194574 ~ 36202847 (+)
G882789 NA non-coding upstream 80769 35736797 ~ 35737299 (+)
G882775 NA non-coding upstream 145651 35671897 ~ 35672417 (+)
G882702 NA non-coding upstream 168599 35537466 ~ 35649469 (+)
G882700 rir1 non-coding upstream 285321 35529966 ~ 35532747 (+)
G882626 NA non-coding upstream 397621 35420231 ~ 35420447 (+)
LOC110534918 cchcr1 non-coding downstream 1478 35865115 ~ 35872210 (+)
G883158 NA non-coding downstream 33351 35902820 ~ 35903134 (+)
G883202 NA non-coding downstream 121100 35990569 ~ 35993332 (+)
G883242 NA non-coding downstream 214302 36083771 ~ 36086700 (+)
G882624 NA other upstream 401830 35414975 ~ 35416238 (+)
mogat3b LOC106603399 other upstream 496267 35307753 ~ 35321801 (+)
G882300 NA other upstream 582843 35225097 ~ 35264333 (+)
G882265 NA other upstream 654562 35161348 ~ 35163506 (+)
G883473 om-i other downstream 423845 36292302 ~ 36295572 (+)
LOC110533788 NA other downstream 929916 36799376 ~ 36801589 (+)
G883966 NA other downstream 980177 36849646 ~ 36851153 (+)
LOC110533845 LOC106603305 other downstream 2886040 38755443 ~ 38815017 (+)
G889906 LOC106603262 other downstream 5842858 41712327 ~ 41717292 (+)

Expression



Co-expression Network