G883528


Basic Information

Item Value
gene id G883528
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36339503 ~ 36339836 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1005379
acttaaaacttgctaccctctccactactgttccatcgatgtggataggggggtgttccctctgctgtttcctgaagtccacaatcatctccttagttttgttgacgttgagtgtgaggttattttcctgacaccacacaccgagggccctcacctcctccctgtaggccgtctcgtcgttgttggtaatcaagcctaccactgttgtgtcgtccgcaaacttgatgattgagttggaggcgtgcgtggccacgcagtcgtgggtgaacagggagtacaggagagggctcagaacgcacccttgtggggccccagtgttgaggatcagcgggga

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1005379 True 334 lncRNA 0.54 1 36339503 36339836

Neighbor

gene id symbol gene type direction distance location
LOC110533775 LOC106603239 coding upstream 35839 36301854 ~ 36303664 (+)
LOC110533771 LOC106603372 coding upstream 82879 36248874 ~ 36256624 (+)
LOC110533770 LOC106603373 coding upstream 93188 36219367 ~ 36246315 (+)
fam76b LOC106603374 coding upstream 136656 36194574 ~ 36202847 (+)
LOC110533767 mtmr2 coding upstream 145286 36183235 ~ 36194217 (+)
LOC110533776 LOC106603369 coding downstream 10234 36350070 ~ 36377139 (+)
tmprss4b LOC106603365 coding downstream 305884 36645720 ~ 36650306 (+)
LOC110533779 LOC106603362 coding downstream 344030 36683866 ~ 36698702 (+)
LOC110533102 NA coding downstream 362882 36702718 ~ 36704449 (+)
LOC110533781 NA coding downstream 372115 36711951 ~ 36713863 (+)
G883523 NA non-coding upstream 5817 36333465 ~ 36333686 (+)
G883513 LOC106603370 non-coding upstream 13060 36317104 ~ 36326443 (+)
G883473 om-i non-coding upstream 43931 36292302 ~ 36295572 (+)
G883508 NA non-coding upstream 48192 36291090 ~ 36291311 (+)
G883507 NA non-coding upstream 48836 36290442 ~ 36290667 (+)
G883529 NA non-coding downstream 202 36340038 ~ 36340551 (+)
G883535 NA non-coding downstream 5065 36344901 ~ 36345134 (+)
G883550 NA non-coding downstream 46596 36386432 ~ 36388747 (+)
G883552 NA non-coding downstream 49464 36389300 ~ 36390922 (+)
LOC110533748 prps1 other upstream 652930 35674201 ~ 35686573 (+)
G882624 NA other upstream 923265 35414975 ~ 35416238 (+)
mogat3b LOC106603399 other upstream 1017702 35307753 ~ 35321801 (+)
G882300 NA other upstream 1104278 35225097 ~ 35264333 (+)
LOC110533788 NA other downstream 459549 36799376 ~ 36801589 (+)
G883966 NA other downstream 509810 36849646 ~ 36851153 (+)
LOC110533845 LOC106603305 other downstream 2415673 38755443 ~ 38815017 (+)
G889906 LOC106603262 other downstream 5372491 41712327 ~ 41717292 (+)
G890228 NA other downstream 5738379 42078215 ~ 42154093 (+)

Expression


Co-expression Network