G883559 (LOC106567837)


Basic Information

Item Value
gene id G883559
gene name LOC106567837
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36402790 ~ 36403079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1005411
TGCCATCGTAGTCTGTGGTGGCGAACTGGGAGCTCTGGTTCCCACAGCCGGCACTGTTGCAGGCCTTCATCTTCAGTTCGTACCAGGTGGCCTCCCGCAGCTCGCTGAGGAAGAGCTGGGCTGTGGCGTTGGCCTTCAGGCTCTGCCAGGCCCACGTGCCCTTGGGCCGGAAGTCCAGCAGCAGAGCGGTGATGGGGCAGCCTCCGCTGGTCCAACCCTGCAGGTTGAGCCCCGCGTGGGTGGAGTTGATGTGGGTGAGCAGGGGCTGCTCCTTGTTGAACGCAGGCTCT

Function

NR:

description
PREDICTED: Down syndrome cell adhesion molecule-like protein 1 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1005411 True 290 lncRNA 0.64 1 36402790 36403079

Neighbor

gene id symbol gene type direction distance location
LOC110533776 LOC106603369 coding upstream 25651 36350070 ~ 36377139 (+)
LOC110533775 LOC106603239 coding upstream 99126 36301854 ~ 36303664 (+)
LOC110533771 LOC106603372 coding upstream 146166 36248874 ~ 36256624 (+)
LOC110533770 LOC106603373 coding upstream 156475 36219367 ~ 36246315 (+)
fam76b LOC106603374 coding upstream 199943 36194574 ~ 36202847 (+)
tmprss4b LOC106603365 coding downstream 242641 36645720 ~ 36650306 (+)
LOC110533779 LOC106603362 coding downstream 280787 36683866 ~ 36698702 (+)
LOC110533102 NA coding downstream 299639 36702718 ~ 36704449 (+)
LOC110533781 NA coding downstream 308872 36711951 ~ 36713863 (+)
LOC110533785 LOC106603357 coding downstream 385381 36788460 ~ 36793079 (+)
G883558 NA non-coding upstream 392 36401872 ~ 36402398 (+)
G883556 LOC106603368 non-coding upstream 1841 36400351 ~ 36400949 (+)
G883480 LOC106603368 non-coding upstream 2540 36397032 ~ 36400250 (+)
G883481 NA non-coding upstream 7288 36394829 ~ 36395502 (+)
G883555 NA non-coding upstream 9192 36393397 ~ 36393598 (+)
G883616 NA non-coding downstream 160804 36563883 ~ 36564497 (+)
G883847 LOC106603367 non-coding downstream 215801 36618880 ~ 36620197 (+)
G883858 NA non-coding downstream 235400 36638479 ~ 36638687 (+)
G883859 NA non-coding downstream 237913 36640992 ~ 36641207 (+)
G883864 LOC106603364 non-coding downstream 251617 36654696 ~ 36654921 (+)
G883473 om-i other upstream 107243 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 716217 35674201 ~ 35686573 (+)
G882624 NA other upstream 986552 35414975 ~ 35416238 (+)
mogat3b LOC106603399 other upstream 1080989 35307753 ~ 35321801 (+)
G882300 NA other upstream 1167565 35225097 ~ 35264333 (+)
LOC110533788 NA other downstream 396306 36799376 ~ 36801589 (+)
G883966 NA other downstream 446567 36849646 ~ 36851153 (+)
LOC110533845 LOC106603305 other downstream 2352430 38755443 ~ 38815017 (+)
G889906 LOC106603262 other downstream 5309248 41712327 ~ 41717292 (+)
G890228 NA other downstream 5675136 42078215 ~ 42154093 (+)

Expression


Co-expression Network