G883877


Basic Information

Item Value
gene id G883877
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36666638 ~ 36666901 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1005757
GTgatattgtatgtgtggggttcagagatgagatagtcacacagataattgtatgtgtggggttcagagatgaggtagtcacacagataattgtatgtgtggggttcagagatgaggtagtcacacagataattgtatgtgtggggttcagagatgaggtagtcacacagataattgtatgtgtggggttcagagatgaggtagtcacacagataattgtacgtgtggggttcagagatgaggtagtcacacagatatttgtat

Function

NR:

description
PREDICTED: uncharacterized protein LOC107742611

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1005757 True 264 lncRNA 0.42 1 36666638 36666901

Neighbor

gene id symbol gene type direction distance location
tmprss4b LOC106603365 coding upstream 16332 36645720 ~ 36650306 (+)
LOC110533776 LOC106603369 coding upstream 289499 36350070 ~ 36377139 (+)
LOC110533775 LOC106603239 coding upstream 362974 36301854 ~ 36303664 (+)
LOC110533771 LOC106603372 coding upstream 410014 36248874 ~ 36256624 (+)
LOC110533770 LOC106603373 coding upstream 420323 36219367 ~ 36246315 (+)
LOC110533779 LOC106603362 coding downstream 16965 36683866 ~ 36698702 (+)
LOC110533102 NA coding downstream 35817 36702718 ~ 36704449 (+)
LOC110533781 NA coding downstream 45050 36711951 ~ 36713863 (+)
LOC110533785 LOC106603357 coding downstream 121559 36788460 ~ 36793079 (+)
LOC110533788 NA coding downstream 132475 36799376 ~ 36801589 (+)
G883864 LOC106603364 non-coding upstream 11717 36654696 ~ 36654921 (+)
G883859 NA non-coding upstream 25431 36640992 ~ 36641207 (+)
G883858 NA non-coding upstream 27951 36638479 ~ 36638687 (+)
G883847 LOC106603367 non-coding upstream 46441 36618880 ~ 36620197 (+)
G883616 NA non-coding upstream 102141 36563883 ~ 36564497 (+)
G883906 NA non-coding downstream 63681 36730582 ~ 36730810 (+)
G883889 NA non-coding downstream 66687 36733588 ~ 36746662 (+)
G883914 NA non-coding downstream 83463 36750364 ~ 36750630 (+)
G883916 NA non-coding downstream 88564 36755465 ~ 36777127 (+)
G883473 om-i other upstream 371091 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 980065 35674201 ~ 35686573 (+)
G882624 NA other upstream 1250400 35414975 ~ 35416238 (+)
mogat3b LOC106603399 other upstream 1344837 35307753 ~ 35321801 (+)
G882300 NA other upstream 1431413 35225097 ~ 35264333 (+)
G883966 NA other downstream 182745 36849646 ~ 36851153 (+)
LOC110533845 LOC106603305 other downstream 2088608 38755443 ~ 38815017 (+)
G889906 LOC106603262 other downstream 5045426 41712327 ~ 41717292 (+)
G890228 NA other downstream 5411314 42078215 ~ 42154093 (+)

Expression


Co-expression Network