G884542


Basic Information

Item Value
gene id G884542
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36996492 ~ 37038509 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1006524
ACTCACATTGAGTATCTTTATTCCTCCCAAGCTTGCACCTCATCATGCATGAGTAGATTGAGTTGAGAGCTGCACAGAAAAGACATATGAACCTACAGCGACATCTGCTggccataaataaatcaaaaaggCAGTGACACTGGGAACACAGCATGCTGCTACTCATTTGGGACCCCGGTTCAGACTTGAGATAAGAATACTTAAGGCAAAGTGCATAAGAAATGTAAGTGTTTCTGCCCAGACCAAACGCTCTGCTATTGGCATGTTACATACTAGTAACAATAGAATCAGAAATCAACCtttttttacttgcatttaaaagtgACAACTGATACACAAACAAGATCAGACagcaataaaacatttaaaaagtcaCCCTTTGGCTACCTTTAGAGTCACAACAATACTTGCATTTTTCAGCACTTAACTCCTAAAAGTACTTAATACATTATCTAAAAACACAGCAGTGAAAGCTGTAATCTCAAATTGCACTTCTCTGCTtaaatgcacacaaacacaacagCAGTATATTCACATtagcaacaaaataacaatatttaATTTGTAGAGCTTATATCCCACACTCAATGCAAAGTATTGGACACACAAATTGGTTCCCATGATGAGTCAAAACGTATCAATAACTGATCAGCGGTCATAAGAAAATCCCCTCCACTCTAAATTCCATTCATCAAGAGGCGTATCACCACTAGGCTGCCATACAGGCAGCATCAATGTACAGTCCATGTGGCCTAGTAGTCACATCATACAAACAGAATCAAGTGGACAAGACTGTAAATGGTTCAAAGCTGTGGGAATGGATGTAATAAAGTAGAGTTAGTCCTCTCGCAGATATGCCTCAGGGATGTCTTCTTCCTCCATGGCGGCAGGTAGCTTGATCCTTTGACTGTCCTCTGCTTTGGACTCCTTTAGTTTCTTCTCTGCCTCCATAAAGAGCTGTCTGATCTGATTGACATGAGACTGCGCCACCTGGAGGCTGGTCTGTGCTGTCACAGACGCCTGGT
>TU1006525
ccagcattgcaTAGTCCTTAGCACAGGtatttcctgtttgagtttctgcctataggaagggagcagcaaaatggagtcgtggtcagattttccaaaaggaggTGACACTGGGAACACAGCATGCTGCTACTCATTTGGGACCCCGGTTCAGACTTGAGATAAGAATACTTAAGGCAAAGTGCATAAGAAATGTAAGTGTTTCTGCCCAGACCAAACGCTCTGCTATTGGCATGTTACATACTAGTAACAATAGAATCAGAAATCAACCtttttttacttgcatttaaaagtgACAACTGATACACAAACAAGATCAGACagcaataaaacatttaaaaagtcaCCCTTTGGCTACCTTTAGAGTCACAACAATACTTGCATTTTTCAGCACTTAACTCCTAAAAGTACTTAATACATTATCTAAAAACACAGCAGTGAAAGCTGTAATCTCAAATTGCACTTCTCTGCTtaaatgcacacaaacacaacagCAGTATATTCACATtagcaacaaaataacaatatttaATTTGTAGAGCTTATATCCCACACTCAATGCAAAGTATTGGACACACAAATTGGTTCCCATGATGAGTCAAAACGTATCAATAACTGATCAGCGGTCATAAGAAAATCCCCTCCACTCTAAATTCCATTCATCAAGAGGCGTATCACCACTAGGCTGCCATACAGGCAGCATCAATGTACAGTCCATGTGGCCTAGTAGTCACATCATACAAACAGAATCAAGTGGACAAGACTGTAAATGGTTCAAAGCTGTGGGAATGGATGTAATAAAGTAGAGTTAGTCCTCTCGCAGATATGCCTCAGGGATGTCTTCTTCCTCCATGGCGGCAGGTAGCTTGATCCTTTGACTGTCCTCTGCTTTGGACTCCTTTAGTTTCTTCTCTGCCTCCATAAAGAGCTGTCTGATCTGATTGACATGAGACTGCGCCACCTGGAGGCTGGTCTGTGCTGTCACAGACGCCTGGT

Function

NR:

description
Diablo homolog, mitochondrial precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1006524 False 1025 lncRNA 0.41 2 36996492 36997565
TU1006525 True 993 lncRNA 0.41 3 36996492 37038509

Neighbor

gene id symbol gene type direction distance location
LOC110533104 LOC106603410 coding downstream 22730 36970368 ~ 36973762 (-)
LOC110533795 LOC106603346 coding downstream 39563 36955967 ~ 36956929 (-)
LOC110533793 LOC106603347 coding downstream 84015 36909144 ~ 36912477 (-)
ucp2a ucp2a coding downstream 100318 36891951 ~ 36896174 (-)
LOC110533791 LOC106603351 coding downstream 120263 36855317 ~ 36876229 (-)
LOC110533798 LOC106603343 coding upstream 40419 37078928 ~ 37089372 (-)
rtn2b rtn2 coding upstream 51058 37089567 ~ 37099554 (-)
LOC110533799 LOC106603238 coding upstream 74621 37113130 ~ 37117261 (-)
sdhaf1 sdhaf1 coding upstream 82697 37119655 ~ 37123249 (-)
qpctlb LOC106567815 coding upstream 89126 37127635 ~ 37134997 (-)
G884519 NA non-coding downstream 74126 36922166 ~ 36922366 (-)
G884398 NA non-coding downstream 216766 36756002 ~ 36779726 (-)
G884423 NA non-coding downstream 254449 36740710 ~ 36742043 (-)
G884417 NA non-coding downstream 263543 36732718 ~ 36732949 (-)
G884410 NA non-coding downstream 272951 36723296 ~ 36723541 (-)
G884653 NA non-coding upstream 73642 37112151 ~ 37112932 (-)
G884705 NA non-coding upstream 217378 37255887 ~ 37256086 (-)
G884719 NA non-coding upstream 254763 37293272 ~ 37293563 (-)
G884725 NA non-coding upstream 262263 37300772 ~ 37301123 (-)
scn4bb LOC106603364 other downstream 331135 36652707 ~ 36665717 (-)
G883754 NA other downstream 603965 36391103 ~ 36392527 (-)
G883753 NA other downstream 605578 36389997 ~ 36390914 (-)
G883128 NA other downstream 1115541 35880524 ~ 35880951 (-)
G882971 rb1 other downstream 1397407 35598317 ~ 35599085 (-)
G884736 NA other upstream 278408 37316917 ~ 37318864 (-)
LOC110533823 LOC106603321 other upstream 560124 37518096 ~ 37704039 (-)
G885767 NA other upstream 1200441 38238950 ~ 38240559 (-)
rpl36a LOC106568029 other upstream 2145189 39183698 ~ 39185578 (-)
G887329 NA other upstream 2178804 39217313 ~ 39217738 (-)

Expression


Co-expression Network