G884287 (LOC106603328)


Basic Information

Item Value
gene id G884287
gene name LOC106603328
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37362211 ~ 37365265 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1006242
tttatttaaaaaaacaaaacacacaatcaaaaaTATTGTGTAGAAAAAAGTCACGTTTATTATTACACCTAGAATGTCATCATTGCTGGATTCAGAAACTACTAATCTGCTGCTTAAAGGCAAGTCCATTTACCATCTATTATATTAAGAGAACATGTTCACAAATTATTGAGTAGGGATTTATCCATTGGCCCAAGTGATGTTTTCAAACTATACCCACAGTTTGCAGACGACAGTTACTGCTGTCTCGTGATTAACTAACGAAAACCTTGATTGATTTTGCAGTCCCATCTCTTTCCCTAGTGTGGCAACATGACTAAGCAGTAGCATGGCCCATCAGATGACACTTAAGGGCTATTTCAGAGACCCTAAACCAGAGTGTAGTAGGCTGATTCATGGGGTAGTGGAGCCGGGTGTATCCTGGGGGCATGGGGAGCACAGGAGGGCTGATTCCTGGAACACTTAGCGTATGACACACACAGAGCACCTTATGTTAGGAAGtcgaaggagagaagagaacctGGCTGTCTGTAGCCTTGGTTTCTGTTTCTTAGGCAACGTTGCCAAGTGGCTCAGCTGTGTCGGACCCTCCGACCTTTGACCAAGCAAACACAACCCTCTGGTTCAATAATGCTCACAACAAAAAAATCTATCACAAAACAGCCCAGAAAAGGTGTATTTGTATGCAAATGTGTTGAGTATTATTGGCACAATTTATCTGTGTTTTGTACACAAATAAAAAGTCCTTCGTTGTTTAGAACTGCATGGAGCGAAATCTGTTCTTTGCTCTTTGTGGCTTGTCTGGTCATCCAATATTGTGATTAAGAGTAAAATCAGAGGGCAGGATAGCATACTCAGCCCAACAAAACATCTCAAATTCAGCTGCCACATACAATAGATACATGTGCAAACATTTCACCATCATTAATATTAGCTAAGGAATAATTGCAAAGTGTATAATACAgtgaaaaaatataaatatttctgTAGTAAAAAAATTTCCTTTTCAGTATGAGGTGGAAGTGAGTGGTGGCTATGGGCGAGCCTCTCCCCAAAGTACCATGATGCACTTTGGTTTGTGTTTGAACATGCTGGGTTGAAGGACAGTGCCCTGGAAGTTATAAATTAATGTGTGCATTTGATTTAGATCAATGAAAGTATGTTCCGACCAACAGAAATGGAACTCAATGGTAGACCCTTATACAATCGCTTTGCATTTCTCCTTTCCAATTACCCACACTCTTTCACTACACTAGACATCACTCAACCATAACAACCACACGCTACAGGAAGAGGATACGGCAAAGCCTCTATTAACCTATTGTATGTGCAAATATACAAACTCTACAGAATTGATAAGGATTACGGGGGATATAGCATTAAACATTCAGTGGCCCAGGAGTTAACTAAGGAGGTCTGCCTCTGATTCAATGGCAGAACATTGTACTGTAGGCATGCAGCATTTTATTAGTAGACATAATTAATGATGGAAGAAGTCACCACAACTAATTAGAATCAATACGTTCCCACGCAAAGATAGTCTGAGAACTAAAACCCACAGACACAGCAGTCCTCTAAGACCTAGCCTGGATGCCTAAAAATAGATTAATGAATGCGGTGAATGAGCACACCAGAGTTGACCTCCCAAAGTAAATGATGGGGGTTGGGGAGGATGAAGCATAGTGGGAGGGTTAGCGTCAATCAGACAACCCAACACTGAGAGGGGGTCATGTGGAAGAGGGTAATTTAGggagagatgtactgtactgttcagacagaacacaaacagagagaaggaaagggagcatcagtctgtctgtcatccAGATGTAGAGGACAGCAGAGCTTAGTCTCCTTGAGCTATAATATATGAGCACCAGTTTTTGGCATCTCTTGAACCTTTGTTGTTGTATGATCAGGAAGATCGGAGGTGAGAAGGAGGGTAAGAGAAAGATGGGGGAGGAAAACTgaggatgagaaggagaagaGTTATGAGTTGATAGAAGAGGAGTAAGGGGAGTCTAAGGCCCAGGAGAGCAGTAAGTAAGGCGGAGGTGAGTGAGTTGACTTGTGGGTCCATGTTGATGAGTAGCTTTGAAGACCAGGGAGGGAGATTCCTTGGCAAGATAAGGAGCACCACTGCCAGTAGAGTCGTAAACAGTCTCGTACACAAAGCAAAATGATACAAAAATCAATAAAAAAATTAAAGCAAAATCCCTGAAGTATTAATTTAGTCAATTGTACAGTCTCACGCCTGGTGGGTAAGGTAGATAGGTGGTTGGTAGAAGGCCCAGTTTAAGGTGGTTTGAGGGGGTTGTGTGAGTCAGTGGTTCCAGCCCATAAGGTGGCTGACCCGGGCCTTTTCGGTCATGCGGCGTAGGCGTCCTGAGCGGGACATGCCTAGGTTGAGTGGGTCCTCTGTGGTCCCTGACTCGTCATCTGACTCGTCATTGTACAACACTGTCCTGCGGCCCTGGTTCCGAGTGTTCACCTGACCAGACTTACTACGGCTGCTGCTTTTCTGACCGCCCTCTGCCCCACCCTCACCCTGCTCtgagtcctcctcctcttctgattCCTCCATTTCCTCAGGCTCCTCTTCGTCCTCAGGCTCCTCCTCTTCGTCCTCaggctcctccccttcctcttgaTGCGGTGGCTGTGGctgctcctctgCCTGGACTCGTGCTCTCTTGGCTCTTTCTGGAGCTTCCTCTTCTTCCAGCATCCTCTTCCCAGAGACGGCCATCTTGCCCTTGACTTTGTAGCCCGTTTTTAAGCGGGGAGCTTTGCTGTAGTCGTGATCTCCCCCGTCCACAAACTTTCCAACCTCTGACTCACTGTCCGACTCACTgtctgatgaggaggaggatgatgaggaagACGAGGAAGACGATGACGAAGATGAGCTATTGGATCCTCCagatccctctccctcatcctcctgcaGCACTCGTCTCCTGTGGCTCTGTCTGGTGCCGTTAGTGAGAGGTCTGTT

Function

NR:

description
bromodomain and WD repeat-containing protein 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1006242 True 2998 lncRNA 0.45 2 37362211 37365265

Neighbor

gene id symbol gene type direction distance location
LOC110533815 LOC106603329 coding upstream 2215 37353926 ~ 37359996 (+)
nup62l LOC106603332 coding upstream 41597 37314915 ~ 37320614 (+)
cnga2b cnga2 coding upstream 69730 37289035 ~ 37292481 (+)
LOC110533811 LOC106603334 coding upstream 85175 37259490 ~ 37277036 (+)
LOC110533802 bhmg1 coding upstream 219738 37135196 ~ 37142473 (+)
LOC110533818 LOC106603326 coding downstream 39082 37404347 ~ 37417371 (+)
LOC110533820 LOC106603324 coding downstream 53828 37419093 ~ 37478728 (+)
LOC110533821 LOC106603323 coding downstream 113656 37478921 ~ 37497546 (+)
agtr2 agtr2 coding downstream 131757 37497022 ~ 37518509 (+)
LOC118966772 NA coding downstream 338784 37704049 ~ 37710683 (+)
G884271 NA non-coding upstream 18331 37343426 ~ 37343880 (+)
G884266 NA non-coding upstream 26540 37335284 ~ 37335671 (+)
G884263 NA non-coding upstream 32375 37329533 ~ 37329836 (+)
G884210 NA non-coding upstream 34022 37327953 ~ 37328189 (+)
G884261 NA non-coding upstream 35002 37326985 ~ 37327209 (+)
G884828 LOC106603321 non-coding downstream 157820 37523085 ~ 37525037 (+)
G884830 LOC106603321 non-coding downstream 162362 37527627 ~ 37528005 (+)
G884829 LOC106603321 non-coding downstream 162886 37528151 ~ 37528428 (+)
G884832 LOC106603321 non-coding downstream 165178 37530443 ~ 37530677 (+)
G884833 LOC106603321 non-coding downstream 167211 37532476 ~ 37532965 (+)
G883966 NA other upstream 511058 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 560626 36799376 ~ 36801589 (+)
G883473 om-i other upstream 1066664 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 1675638 35674201 ~ 35686573 (+)
G882624 NA other upstream 1945973 35414975 ~ 35416238 (+)
LOC110533845 LOC106603305 other downstream 1390244 38755443 ~ 38815017 (+)
G889906 LOC106603262 other downstream 4347062 41712327 ~ 41717292 (+)
G890228 NA other downstream 4712950 42078215 ~ 42154093 (+)
G891133 NA other downstream 5617417 42982682 ~ 43109676 (+)
G891188 NA other downstream 5731455 43096720 ~ 43097617 (+)

Expression


Co-expression Network