G884986


Basic Information

Item Value
gene id G884986
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37497268 ~ 37499542 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1007011
ctttattctctatttggcTATTCTAATGCACAAAATAAAACTTTGTCATGGTGAAGATTGATATCCAACAGCTGAATTCAGGGAAGTGTTAAAACATGTTAAATTGTAAAATATGTTCTCCTATCTGTAAAATACCCCAAAAATATGAAATTACATTGATAgctctatttcaaaCTGACATCAAGTACTAGGACATCATTCAAATGAttccaacacacatacactccatgaccaaaagtatgcggacacctgcttgtcgaacatctcattccaaaatcattcatatggagttggtcccctttgCAGCCAAAACAGCCtaaactcttctgggaaggctttccactagatgttggaaaattgatgcagggacttgcttccattcagccacaagatgttgggcaattaggcctggctcacagtctgcattctaattcatcccaaaggtgttcgacatggttgaagtcagggctctgtgcaggccagtcaagttcttccacacctatctcaacaaactatttctgtatggatctcgctttgtgcacgggggaattgtcatgctgaaacaggaaagggccttccccaaactgttgccacaaatttggaggcacagaattgtctagaatgtcattgtatgttggaGCATTAAGAtatttcactggaactaaggggcctaaccataaaaaaacagccctagaccattattcctcctccaaactttacagttggcaatatgcatcggggcaggtagcgttctcctggcatttcGCCAAATCCAAATTTGTCCGtggaactgccagatggtgaagtgtgattaatCACTCCTGAGAACGTCAAATCtctgccatgctagagctgccccggtcaactgtaagtgctgttattgtgaagtggaaatgtctaggagcaacaacatttgcatagacTGACCTGACTAATAGGAGAAGGTAAATTCGCAAGACAGAAAAAACGACAGCGTAGCAGTGACCTAAGTAAATAACAAGtccctagtaaaaaaaaaaaaagatgcctATTATGAATTCTTATTGTATAAATGGTCCAGTATGGTTAGTAACGGAATTTGTTTGAGTAACTTCTTTCACAGTATAACAGTGTTAACGAGCTCCACAAATAAATCTACATTCTGtgaccagtttattaggtacaccatccAGTTCCCGAAAATGGTCCGCTCTTACAGACAAGACTGAGTCATGTGGCCATGGCACGCTATATAAAACAGGCAGTGAAGCgctcagttactgttcgattgaacgttagaatgggcaaaacgagtgacctaagcgactttgagcatAGTATGATTCCAATATTTCAGAAACAGCCGatctcctgggcttttcacaaaTTACAGTGTCTAAGGTTTACCGAGAAtgttgcaacaaacaaaaaacatcacccacatcagtcctgtgggtgaaaacagcccgttgatgagaggtcgaaggagaatggcatgAATCGTGCAAGCTaccaggcgggccacaaacaggcaaataacgacaacgtacaacagtggtgtgcagaactgcatctcggaacgcacaactcgtcagtCCTGgtcacagatgggctattgcagcagacgaccacaccgggttctaCCCATCTCAGCTAataagaagcggctccagtgagcacgcgatcaccaacactggacaattgaagagcggaaaaacattgcctggtcctgcgaatcccggttcctgtcaCGTCAAGCTGATGgctgagtcaggatttggcgCAAACAGCATGAGTCTATGGCCCCAACCTGCCTGGTGTCGGCGGTGGTGTAATGgagtggggaatgttttcctggcacacgttaggtcccttgataccaactgAGCAACGTGTCCACACCCCGAacaattcaggctgttctggagacaAAGGGTGGTCCGACCCAGTACTAGAGTGTACCTAATGAACTGACCACTGAGTAAGTATTGGTAAGTAAAACCTTGTGTAGTGGCTCTGGAAGTAGGGTGTAAAGATGTCCGTTTGTGCCTGTGGATGCAGATGATGacctgcaccctgttccctgtggGTGTCTACATGTAAACTGCAGGCCATGCAAAGAAACAGATGACACCAGAGGTCAAAATTCCAACACACTATTGCTGCAACCTGATTCTCAATCCTCCTCCCTGATATGGATTCAAATTGTTAAATCCATGACCGGTAGTGTGCAATTGCACACTTGGGGAGAAGGGTGGATAATCGGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1007011 True 2246 lncRNA 0.45 2 37497268 37499542

Neighbor

gene id symbol gene type direction distance location
LOC110533817 LOC105026967 coding downstream 94518 37399405 ~ 37402750 (-)
LOC110533816 LOC106603328 coding downstream 101447 37362189 ~ 37395821 (-)
chmp1b LOC106603331 coding downstream 145674 37348472 ~ 37351594 (-)
LOC110533809 LOC106603335 coding downstream 248815 37202094 ~ 37248453 (-)
LOC110533823 LOC106603321 coding upstream 18554 37518096 ~ 37704039 (-)
LOC110533824 LOC106603320 coding upstream 343992 37843534 ~ 37867857 (-)
LOC110533826 LOC106603319 coding upstream 399532 37899074 ~ 37926052 (-)
amer1 LOC106603317 coding upstream 439515 37939057 ~ 37943052 (-)
asb12a LOC106603316 coding upstream 445937 37945479 ~ 37947880 (-)
G884981 NA non-coding downstream 529 37496094 ~ 37496739 (-)
G884983 NA non-coding downstream 5613 37491195 ~ 37491655 (-)
G884806 NA non-coding downstream 32737 37461689 ~ 37464531 (-)
G884764 NA non-coding downstream 93412 37403606 ~ 37403856 (-)
G884996 NA non-coding upstream 22233 37521775 ~ 37522007 (-)
G885005 NA non-coding upstream 37501 37537043 ~ 37537245 (-)
G885021 NA non-coding upstream 71089 37570631 ~ 37570830 (-)
G885022 NA non-coding upstream 71607 37571149 ~ 37571413 (-)
G885023 NA non-coding upstream 72376 37571918 ~ 37572217 (-)
G884736 NA other downstream 178404 37316917 ~ 37318864 (-)
scn4bb LOC106603364 other downstream 831911 36652707 ~ 36665717 (-)
G883754 NA other downstream 1104741 36391103 ~ 36392527 (-)
G883753 NA other downstream 1106354 36389997 ~ 36390914 (-)
G883128 NA other downstream 1616317 35880524 ~ 35880951 (-)
G885767 NA other upstream 739408 38238950 ~ 38240559 (-)
rpl36a LOC106568029 other upstream 1684156 39183698 ~ 39185578 (-)
G887329 NA other upstream 1717771 39217313 ~ 39217738 (-)
ksr1a LOC106603285 other upstream 2355424 39843126 ~ 39893728 (-)

Expression


Co-expression Network