G884830 (LOC106603321)


Basic Information

Item Value
gene id G884830
gene name LOC106603321
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37527627 ~ 37528005 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1006853
gtctgtagcggATGGTGCACATGAAGCCCTGGTTCATGAGGTGGATGGTCTTCACCCCCCCGGAGGTCTCCTCGTAGGTGTAGGTGACCAGGGTGGTGTCGTACAGGATCTCTGCCAGGCGGGACTGGCGGGTGTAGCGGTAGAGGATACGGCGGCCAGTGCCCAGGTACAGAGTCTGGAGCAGACGGCCATCATGGCTGTAGTCGTGGATCACAGAGGCTCCGCTGCTGTCTGGTGGGCTGTAGGTGTTCCTGTAGTAGCCCACTGACAGCATAGACTGCAGGCTGTGACGCACCATACTGGGCATGGTCACAGACATCAGGTAGTCCGTGTGGTCATACTCAAAGGTGTACCGCCGCTGGCTGTGCAACAGCAGCAT

Function

NR:

description
LOW QUALITY PROTEIN: teneurin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1006853 True 379 lncRNA 0.59 1 37527627 37528005

Neighbor

gene id symbol gene type direction distance location
agtr2 agtr2 coding upstream 9118 37497022 ~ 37518509 (+)
LOC110533821 LOC106603323 coding upstream 30081 37478921 ~ 37497546 (+)
LOC110533820 LOC106603324 coding upstream 48899 37419093 ~ 37478728 (+)
LOC110533818 LOC106603326 coding upstream 110256 37404347 ~ 37417371 (+)
LOC110533815 LOC106603329 coding upstream 167631 37353926 ~ 37359996 (+)
LOC118966772 NA coding downstream 176044 37704049 ~ 37710683 (+)
LOC110533825 LOC106603318 coding downstream 348923 37876928 ~ 37896375 (+)
LOC110533830 LOC106603314 coding downstream 445334 37973339 ~ 37992661 (+)
msna LOC106567791 coding downstream 474594 38002599 ~ 38039709 (+)
LOC110533834 LOC106603406 coding downstream 531757 38059762 ~ 38063313 (+)
G884828 LOC106603321 non-coding upstream 2590 37523085 ~ 37525037 (+)
G884287 LOC106603328 non-coding upstream 162362 37362211 ~ 37365265 (+)
G884271 NA non-coding upstream 183747 37343426 ~ 37343880 (+)
G884266 NA non-coding upstream 191956 37335284 ~ 37335671 (+)
G884263 NA non-coding upstream 197791 37329533 ~ 37329836 (+)
G884829 LOC106603321 non-coding downstream 146 37528151 ~ 37528428 (+)
G884832 LOC106603321 non-coding downstream 2438 37530443 ~ 37530677 (+)
G884833 LOC106603321 non-coding downstream 4471 37532476 ~ 37532965 (+)
G884834 LOC106603321 non-coding downstream 5384 37533389 ~ 37533729 (+)
G884838 NA non-coding downstream 9699 37537704 ~ 37538213 (+)
G883966 NA other upstream 676474 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 726042 36799376 ~ 36801589 (+)
G883473 om-i other upstream 1232080 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 1841054 35674201 ~ 35686573 (+)
G882624 NA other upstream 2111389 35414975 ~ 35416238 (+)
LOC110533845 LOC106603305 other downstream 1227504 38755443 ~ 38815017 (+)
G889906 LOC106603262 other downstream 4184322 41712327 ~ 41717292 (+)
G890228 NA other downstream 4550210 42078215 ~ 42154093 (+)
G891133 NA other downstream 5454677 42982682 ~ 43109676 (+)
G891188 NA other downstream 5568715 43096720 ~ 43097617 (+)

Expression


Co-expression Network