G885210


Basic Information

Item Value
gene id G885210
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37760438 ~ 37761589 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1007250
CAGAAACCTACAGTAGGTAGAGCTGCATTTCTTTATGCCCAGAAACCTACAGTAGGTAGTGCTGCATTTCTTTACGTCCAGAAACCTACAGTAGGTAGAGCTGCATTTCTTTACGTCCAGAAACCTACAGTAGGTAGAGCTGCATTTCTTTACGTCTAGAAACCTACAGTAGGTAGAGCTGCATTTCTTTACATCCAGAAATCTACAGTAGGTAGAGCTGCATTTCTTTATGTCTAGAAACATACAGTAGGTAGAGCTGACATTTCTGCCTATTATATCTAACATTTGTTTGCAGACAGGATGCTTTTAAATGTACATCTGGCATGAATGTTCAGCCAGTGTGGCAGCCATGTTCAGACAGTATTTCACAGAATAGCAGACCATTAATAACTAAACTCATTCCAATATTTAGGCCACTGTCACCACTGTTGATAAATGCAAAATATATGTTCAAATACATTTGACTATAAGTGTTAGCAAGACAAGGATACAGGGAGCAAAATGTTATTCAGAACTATTGGTTGTTTGGTTTGGAGAACGTTTGCCATCTCATTACAATACACTAGTCTGTTCCTTTCTCTTTAGTTCAGCTATTCACAAAGCACCTATACCATGGCCTGTAAGTACGGCAGTAGTGTAAACAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1007250 True 645 lncRNA 0.39 2 37760438 37761589

Neighbor

gene id symbol gene type direction distance location
LOC110533823 LOC106603321 coding downstream 56399 37518096 ~ 37704039 (-)
LOC110533817 LOC105026967 coding downstream 357688 37399405 ~ 37402750 (-)
LOC110533816 LOC106603328 coding downstream 364617 37362189 ~ 37395821 (-)
chmp1b LOC106603331 coding downstream 408844 37348472 ~ 37351594 (-)
LOC110533809 LOC106603335 coding downstream 511985 37202094 ~ 37248453 (-)
LOC110533824 LOC106603320 coding upstream 81945 37843534 ~ 37867857 (-)
LOC110533826 LOC106603319 coding upstream 137485 37899074 ~ 37926052 (-)
amer1 LOC106603317 coding upstream 177468 37939057 ~ 37943052 (-)
asb12a LOC106603316 coding upstream 183890 37945479 ~ 37947880 (-)
mtmr8 LOC106603315 coding upstream 196818 37958407 ~ 37965806 (-)
G885033 NA non-coding downstream 175013 37585216 ~ 37585425 (-)
G885031 NA non-coding downstream 178693 37581524 ~ 37581745 (-)
G885030 NA non-coding downstream 179246 37580990 ~ 37581192 (-)
G885026 NA non-coding downstream 185225 37574952 ~ 37575213 (-)
G885025 NA non-coding downstream 187485 37572733 ~ 37572953 (-)
G885222 NA non-coding upstream 17438 37779027 ~ 37779343 (-)
G885245 NA non-coding upstream 29783 37791372 ~ 37791611 (-)
G885253 NA non-coding upstream 36091 37797680 ~ 37798016 (-)
G885451 NA non-coding upstream 54312 37815901 ~ 37816145 (-)
G885452 NA non-coding upstream 56301 37817890 ~ 37818123 (-)
G884736 NA other downstream 441574 37316917 ~ 37318864 (-)
scn4bb LOC106603364 other downstream 1095081 36652707 ~ 36665717 (-)
G883754 NA other downstream 1367911 36391103 ~ 36392527 (-)
G883753 NA other downstream 1369524 36389997 ~ 36390914 (-)
G885767 NA other upstream 477361 38238950 ~ 38240559 (-)
rpl36a LOC106568029 other upstream 1422109 39183698 ~ 39185578 (-)
G887329 NA other upstream 1455724 39217313 ~ 39217738 (-)
ksr1a LOC106603285 other upstream 2093377 39843126 ~ 39893728 (-)
LOC110533878 LOC106603271 other upstream 2735125 40496714 ~ 40547393 (-)

Expression


Co-expression Network