G885320 (LOC106603317)


Basic Information

Item Value
gene id G885320
gene name LOC106603317
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37885017 ~ 37941204 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1007363
atacatttgcaaaaccttttttttttatgtttcgcTTCGTCAATATggactattgtgtgtagattgatgaggatatttttatttaatccattttagaataaggctgtaaactaacaaaatgtgggaaaagttaagggtctgaatactttccgaatgtgctGTTCACGCATGGGCAGCACACacatctttgtcattatggggtattgtgtgtaaaaaaaaaaagttttttctttgtcattatggggtattgtgtgtagattgataaagggaaaaaaacgattcaatcaattttagaataaggctgtaacgtattaaaatgtagaaaaagtcaaggggtctgaatactttccgaaggcaccgtgTGTTTGTTACATTCAACAGGGTGTACCATATCCAGTTTTTCTTCCTTTAATGGTGAAGTCTGCCTGCTGCTCATAGTCCACTGGCCTTACAGGCAGGGCTTTAAAGTGCACATTTGCGACTAAATATTTAGCTGTGCGACCTCAACCTGGAGTTTTACACCAGTGCAACAAAATAAATAACTTCATTTTATTTGTATAATTTTTGTTATAAGGCTTCTCGTTTCCCCGAGTCCAGATTCGTTAGCGTCATGCTTGCACCATGAATACAGCAAAAACTGCTTGATTCTAGCCCAAACAGTTCAAAAGAGCTAACCCATATTATCAGTGCaacctttgttgttgttttttgtcacagGTTGGGAGGCCGCATTTTACATTCATAAACCATGTTGCGGGACGTTCTAAAACTACTTGCGGACTGCATTTGTTTTACACCTTGTTCAGTCATGTTTGAtacctcattagctagctaacaacctgaaAACAGTATATCCAAACATTTGGGGGCACAGAAAGGAAAAGGGATAGCTTCTTCAGGAGATCCATGATCATAACAATGAACAAATGATGTCTTGCATGTCATCACAAACTTGATGCTCTTAAAGAGACGGTGTACAACATTAAATGTTAGTGAATTTACATTATGTAGAGACCTAAAATACCATAAATGACTTAATTTTAATGAGGTATTTATGTCAACATTTTTgcttttaataataaaaaaaagtgtttacaGGGTTTCATATTCGTTTCTAGGGCACAACGTGTGCTTTAGAAGTAGCTAGGCTATACTGTATCTTAACCAATTTTAAAAATCACATTTCTGGTGTTCCTACATTTTTAAAGTTAGTTTAGAGCCCTGCTTACAGTTTAGAGCCCTGCTTACAGAACTGCCAGACTCACAACCAAGGTTGAGGCATGTTATTATGTTGATTTTAAGGATGAGAGCTAACGGTCGATGTGTAAAAAAGCGCCTCACCACCACCATCTGATGCCTTAACTGATCTCCCATAGGGGGCATGGGGCCGACAGGATTCTGATTGCAAAGGAAGATGAGATGGCCTATGTAACGGTCCTGTAATCTGAGAGACATAATTACAGGATACTCTGTCAGTCATTTTGCTAGCTGAGATCTGTTGAGATTTACAGTTTGGGACTCGACTGACAGGCTGACTGAATGATACCATTCGTCTGTTTTGAGTTTGATAGAGACTGTACGTCTGCTCTGTTCTTTTCCCATCTGCTTGTGGGTGCGTTACAGTCCCCTCAGTCTCTGGCTGCCATGACGGAAACATGATCTGTCTATTATCCCGGTTTTCTGAAGTGGAAATGTATCCATTATTTTTGCGGTGAAGCGAGGACACTCTCTTCGAGTCCCTTTCAGTTCTAGGGCAAGACGCTAGTGCTGCCCCACTCCCTAAATACATGTCAGTCATCTCTAACTCCAAGCTCTCCGTGTCCAGGGATCTACTCCTCCTATTTAAGGCCAAAGGACTCAGCAGAGGAGCCAGTGGACTCGACCGATTGACTTGTGTAAGGCTAAGGTGACGTGGCAGGCTGGCAATTCCCCAAGTATTATTGAGACTCTGTTCAAGGAGGTCAAACATACGTAAGTCACATTCAGCAAACGCATCCTTTTGCAGGTAGCTTTCTTCAAACACTTCATAAGGCGACGTGATGTATTCCTCCTCCATTACCATATCCATCTGCTGGTCACATTCCCCCTCGTTATCCATGTCCACGACATCAAATGTGACAATGGCTGGGAGGGCTTGCATGTTTTGGGCAAAGTTTGACTCAGAGCCTCCCATGCTTTCAGTTGAATTACTATAAACATGTGATTGTTTTGTGAAGTCCACTAGAGCTTGGGAGAAGCAAACTGTCTGGTCATCCTCCAAGTCATTCTTTGTTTTAGATAGATCATGATTTCCTCTTAACCGTGGGGACTGTGGCTTGTTTTGCTCATAGTCAATTTCTTGTGATTGACATGTTGAGGTAAAGGTGCCAAAAACGGCATCTGACAATTTAGGGTTGCCAAGCATTTTCTCCCTATTCCCAGTTAGCCTGTCCTCTTCAATTAGACCCGTTTCAGGAGCGAACACAGCATTTACATCTTCACCACCACACTGAGCTGACATGTCTAAAAACTCAAGTGGATCAGAGACGGGCAGCTTAGCTTTTTCAAAAGGTGGACTGATAAGACTGTCATCAGGCTCAAAAAGCTCATACAGTGCATCGCCACTATAACTGTCCCTTGGTAGTCTATCGGTCCTGATCCTGTCAACTTTGTCACGTCCGTCTTCATCTTGTCCTGGGGTGGTAGAGTCATAGTAACCCTCATCGCTGTTAGGAACTGACACTTGATTTTCACTCTGTGGGGTCATCACATCCGAAGATGTAAGGGTGGTCTCTGTAACTCCAAGAGCACCATTGCTGTTGATGCTGATGTCCATGGTATAGGAGCTAGATGGCTCTTCAGGTGTCATCCTAGGACTTTCACTGTGCTCTAGAAAGTCTTCTTCGTGGCTGTGGGTATAGCAAGCGTCCTCTGCAACCTCATTTTCCCAGAGGTTGTGGAGATAATCCCCGTCCACCTTAACAGGGGTGGCCATTTCTTCTCCTCCACCCTGGTACGTAACATAACAGGAACTCCGTTTGCCTGCATTTCGACTCCTTTCCGCTGAGACTGAGCCCTGAGAATCTGCAATACTGTCGTCGTCTTGATCAGCTATTATGTCACCACAGCCAGTGAGCGAGTCAAAACTCTTTAGAGAGGCCACATCACCAAACATCAAGCTCATCTGAGATGAGCCAGTAGGCAGCTGGACGTTCACAATAGACTCTA

Function

NR:

description
APC membrane recruitment protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1007363 True 3207 lncRNA 0.43 2 37885017 37941204

Neighbor

gene id symbol gene type direction distance location
LOC118966772 NA coding upstream 174334 37704049 ~ 37710683 (+)
agtr2 agtr2 coding upstream 366508 37497022 ~ 37518509 (+)
LOC110533821 LOC106603323 coding upstream 387471 37478921 ~ 37497546 (+)
LOC110533820 LOC106603324 coding upstream 406289 37419093 ~ 37478728 (+)
LOC110533818 LOC106603326 coding upstream 467646 37404347 ~ 37417371 (+)
LOC110533830 LOC106603314 coding downstream 32135 37973339 ~ 37992661 (+)
msna LOC106567791 coding downstream 61395 38002599 ~ 38039709 (+)
LOC110533834 LOC106603406 coding downstream 118558 38059762 ~ 38063313 (+)
LOC110533835 NA coding downstream 175950 38117154 ~ 38117987 (+)
ar-beta ar-beta coding downstream 237500 38178704 ~ 38230238 (+)
G885273 NA non-coding upstream 63963 37820772 ~ 37821054 (+)
G885269 NA non-coding upstream 70188 37814630 ~ 37814829 (+)
G885265 NA non-coding upstream 78066 37806653 ~ 37806951 (+)
G885252 NA non-coding upstream 86971 37797806 ~ 37798046 (+)
G885244 NA non-coding upstream 93353 37791447 ~ 37791664 (+)
G885356 NA non-coding downstream 25122 37966326 ~ 37966529 (+)
G885379 NA non-coding downstream 59152 38000356 ~ 38000583 (+)
G885381 NA non-coding downstream 60509 38001713 ~ 38055687 (+)
G885413 NA non-coding downstream 106175 38047379 ~ 38048064 (+)
G883966 NA other upstream 1033864 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 1083432 36799376 ~ 36801589 (+)
G883473 om-i other upstream 1589470 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 2198444 35674201 ~ 35686573 (+)
G882624 NA other upstream 2468779 35414975 ~ 35416238 (+)
LOC110533845 LOC106603305 other downstream 814305 38755443 ~ 38815017 (+)
G889906 LOC106603262 other downstream 3771123 41712327 ~ 41717292 (+)
G890228 NA other downstream 4137011 42078215 ~ 42154093 (+)
G891133 NA other downstream 5041478 42982682 ~ 43109676 (+)
G891188 NA other downstream 5155516 43096720 ~ 43097617 (+)

Expression


Co-expression Network