G885318


Basic Information

Item Value
gene id G885318
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37936993 ~ 37959071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1007361
GAGACTAAAtaaagctcaggtgcatcctgttccattgatcatccttgagatgtttctacaacttgattgtagtccacctttgctaaattcaattgattgtacctGATTTTGAAATTCACACCCGTCTATATTAAAAGGTCCcagttgacagtgcgtgtcagagcaaaaccaggtcgaatgaattgtctgtagagctccaagacagaattgtgttggggcacagatctggggaaaggtaccaaaaaaatgtctgtagtattgaaggtccccaagaacacagtggccttcattattcttaaatggaagatgtttggaaccaccaaaactcttcctagaactggcctcccggcaaaactgagcaatagggggagaagggccttgatcatgGAGGTGACcgagaatccgatggtcactctgacagagctcctctttggagatgggaaaaccttccagaaggacaaccatctctgcagcactccatcaatcaggcctttatggtagagtggccagacagaaaccactcctcagtaaaaggcacatgacagcccgcgtttgccaaaaggcacctaaaggaatctcagaacatgagaaacaagatactctggtctgatgaaagcaagcatacagccaagacaatgcaggagtggcttcgggacaagtctctgaatgtccttgagtggccctactagagcccggacttgaacctgattgaacatccctagagagacctgaaaatagttgtgcagcgacgctccccatccaacctgacagagcttgagaggatctgcagagaataatgggagaaactccccaaatacaggtgtaccaagcgtgtagctgttgaagcacctttggcagcgatttcaaagtactgagtaaacatACGTAACATAGTAATACATATGTAAAAACtgttaataaggctgtaacgtaacaaactgtggaataagtcaagcggtctgaatactttccaaagacaCTGTATTTATCCCCCCAAAAAGGTTGTAAAATaaattgttaaataaatgttcaacTTCTATGGCTGCTAAAGAATTGGATCAGAATTAGTTTCATCAATAAGGCTGTAATTTGCTCAGTCAACTAACAGATTGGATAATCAGGCCACAAGCTTAACTGCTTCAGTGGTTATTTCAGAGGAACTTTGTCCCTCCTCTGACATCTTTGATCTCCATGGAAACAACTGTGCCCTTTGTGGCAGTAACTCAATTTTCTATAGCTACTGGTTCCATCTTCTCGCTCCCTGCAGTAGGTACCAACTCTATTTCAGCCTCCTCCACTGCAGCGCCATTCATGAGTGGTTTAGCATTTTCGGCTGTGTGGCTAACCGATACAGGAGACAAAGAGGTTTGTTCAGGTGGCGTGCCTGTTGGACTGCCCTGATCTGCCAGAACCCCATCCATGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1007361 True 1423 lncRNA 0.45 2 37936993 37959071

Neighbor

gene id symbol gene type direction distance location
LOC110533825 LOC106603318 coding upstream 40618 37876928 ~ 37896375 (+)
LOC118966772 NA coding upstream 226310 37704049 ~ 37710683 (+)
agtr2 agtr2 coding upstream 418484 37497022 ~ 37518509 (+)
LOC110533821 LOC106603323 coding upstream 439447 37478921 ~ 37497546 (+)
LOC110533820 LOC106603324 coding upstream 458265 37419093 ~ 37478728 (+)
LOC110533830 LOC106603314 coding downstream 14268 37973339 ~ 37992661 (+)
msna LOC106567791 coding downstream 43528 38002599 ~ 38039709 (+)
LOC110533834 LOC106603406 coding downstream 100691 38059762 ~ 38063313 (+)
LOC110533835 NA coding downstream 158083 38117154 ~ 38117987 (+)
ar-beta ar-beta coding downstream 219633 38178704 ~ 38230238 (+)
G885273 NA non-coding upstream 115939 37820772 ~ 37821054 (+)
G885269 NA non-coding upstream 122164 37814630 ~ 37814829 (+)
G885265 NA non-coding upstream 130042 37806653 ~ 37806951 (+)
G885252 NA non-coding upstream 138947 37797806 ~ 37798046 (+)
G885244 NA non-coding upstream 145329 37791447 ~ 37791664 (+)
G885356 NA non-coding downstream 7255 37966326 ~ 37966529 (+)
G885379 NA non-coding downstream 41285 38000356 ~ 38000583 (+)
G885381 NA non-coding downstream 42642 38001713 ~ 38055687 (+)
G885413 NA non-coding downstream 88308 38047379 ~ 38048064 (+)
G883966 NA other upstream 1085840 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 1135408 36799376 ~ 36801589 (+)
G883473 om-i other upstream 1641446 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 2250420 35674201 ~ 35686573 (+)
G882624 NA other upstream 2520755 35414975 ~ 35416238 (+)
LOC110533845 LOC106603305 other downstream 796438 38755443 ~ 38815017 (+)
G889906 LOC106603262 other downstream 3753256 41712327 ~ 41717292 (+)
G890228 NA other downstream 4119144 42078215 ~ 42154093 (+)
G891133 NA other downstream 5023611 42982682 ~ 43109676 (+)
G891188 NA other downstream 5137649 43096720 ~ 43097617 (+)

Expression


Co-expression Network