G885526


Basic Information

Item Value
gene id G885526
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37991232 ~ 37992645 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1007600
CTTTATTTGAGGAAACAAACACACTTGGTCATAGAGACTTACATTTTGTTTGAGCCAACAGACCCAAAGAGTTCAGTGTTTTTGTCTTTTTGTAATTGTTTTCTTActtaaaacaatttaaaagcaatgcgtTTCATTCAACATAGAATAGAACAAACTACTGCAGCTTATAACACATGACCTAGTTGTCAACTCACTCCTATAACCCTTTTACATTGCAAAACCACAATACAAGACAGTTCAATTTAGCTTTAGGACATGAGACCTGAACTAATTCACAAATCTGACTTTGTAAGCGCATTTATCATTTATAGTAATAGCACACATCAATAATATTGTTTCTGAAGTAATTTGTAGTAAATCTCATAGTACCTGAGAATTGCTATTGTGGTGTATAAGAGAATTTACAATGTCAGGTGAGCTGGTCTATTTAGAACATTGATTCAAGGTTAATCTACACATTGACAATTATTTGTAGCATTTCAACCCTCTATCTGCTGTGTTCAATTCAAACAATAAAATCAACCGCAAGCCTAGTTGCTGAGACCACCAATATGAAGATAAAGAGTGAAATCAGTCATCACAAACATAGGCCTATCTTTTAAATTCAAATGTAATTACAAATGCTCAGGGCTAAAATAACATTTCTCATTTGAAACATAACTAAAACCAATATAATCTCACATGCTTTAAAATACTTAAGGCTAGATCAAGTGCCATTTGTGAGTGACAAATTTACCAAAGTAAACTATAAATCAATAAAGATATAATCTTGTTACCAAATAAAAGAGGGTTATTCATCAAATCCCTTTCCACACGTTTTACCCTTGTCCAATCAGAGGTAAAACAGATTACTTGTCTCAAATACTCACTTAATCATACTGACACACAGTCACTTGACTTTATTATATCAGTAGACTAAgagttgaatatattattatctgGGTAAAATCATTTTTTCTTTATAGAATTTAACAAATAACCCCCGAAGTTTCGTAACCCAAACAATTATGACTGGCATTTCAATCTATTCCGTTTTCTGTGAAGCAACTAAAATGTAGCCAGATTTGGCATGTTATTCAATGTCTACATGTCAATACATTTAAATACAGATGGTATCAATGCAGGAAAAGAGcagaaaatattatttttttatcaagCTGCTTGGGTTACAACACAGCAAAAAACTTTAATGCAACAAGTTTAATAGCACATTAAAACAGTACATTGAGTGGTAATTTtagtatacacagagagagagagaggacacaatgCTTACAGCTACACACAGGGTATCTGTGCACTTCTATGTAGCACGTAAGTGTCCCTGTAAATAAACTACTGTGCCcagtaagaaataatacataccAATGGGCTACTCCCAGTGACACATAGTGTCACAAACATTATGGca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1007600 True 1414 lncRNA 0.33 1 37991232 37992645

Neighbor

gene id symbol gene type direction distance location
mtmr8 LOC106603315 coding downstream 25426 37958407 ~ 37965806 (-)
asb12a LOC106603316 coding downstream 43352 37945479 ~ 37947880 (-)
amer1 LOC106603317 coding downstream 48180 37939057 ~ 37943052 (-)
LOC110533826 LOC106603319 coding downstream 65180 37899074 ~ 37926052 (-)
LOC110533824 LOC106603320 coding downstream 123375 37843534 ~ 37867857 (-)
arhgap20b LOC106603313 coding upstream 73161 38065806 ~ 38112816 (-)
LOC110533836 LOC106603311 coding upstream 134781 38127426 ~ 38135731 (-)
LOC110533838 LOC106603309 coding upstream 252371 38245016 ~ 38280006 (-)
LOC110533841 LOC106603307 coding upstream 343762 38336407 ~ 38434401 (-)
LOC110533842 LOC106603306 coding upstream 552407 38545052 ~ 38617748 (-)
G885515 NA non-coding downstream 18917 37972088 ~ 37972315 (-)
G885511 NA non-coding downstream 22207 37968811 ~ 37969025 (-)
G885454 NA non-coding downstream 171037 37819902 ~ 37820195 (-)
G885452 NA non-coding downstream 173109 37817890 ~ 37818123 (-)
G885451 NA non-coding downstream 175087 37815901 ~ 37816145 (-)
G885532 NA non-coding upstream 7951 38000596 ~ 38000908 (-)
G885533 NA non-coding upstream 8496 38001141 ~ 38001341 (-)
G885536 moes non-coding upstream 45464 38038109 ~ 38039668 (-)
G885569 NA non-coding upstream 64085 38056730 ~ 38056983 (-)
G885572 NA non-coding upstream 67539 38060184 ~ 38060465 (-)
LOC110533823 LOC106603321 other downstream 287446 37518096 ~ 37704039 (-)
G884736 NA other downstream 672368 37316917 ~ 37318864 (-)
scn4bb LOC106603364 other downstream 1325875 36652707 ~ 36665717 (-)
G883754 NA other downstream 1598705 36391103 ~ 36392527 (-)
G883753 NA other downstream 1600318 36389997 ~ 36390914 (-)
G885767 NA other upstream 246305 38238950 ~ 38240559 (-)
rpl36a LOC106568029 other upstream 1191053 39183698 ~ 39185578 (-)
G887329 NA other upstream 1224668 39217313 ~ 39217738 (-)
ksr1a LOC106603285 other upstream 1862321 39843126 ~ 39893728 (-)
LOC110533878 LOC106603271 other upstream 2504069 40496714 ~ 40547393 (-)

Expression


Co-expression Network