G885509


Basic Information

Item Value
gene id G885509
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 38062852 ~ 38064254 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1007577
attTAACGAATGTACTGTATAACAGTCTTAAACACATACAGTAATAACTAGGACTCTGTGTTTTGTGCAATCATGTGACATGCCTGGATTTTAACCTTTATCTATAACGCATGTATAACGCATGTATACTGCACTCACGCATGTATACTGCATGTATACTGCACCACTTTCATTATTGTCTGTTTTTATGCATGTTTTATCCTAGAACACTAAGAACAGCAACTGTTAACAATAATCCAACATGGCGAGAACCTTCATATCACTGTGTAACAATCAGGGGGGGAAATAATTGCTCTTTTCAGATCTTGTAGCAACTGATAATGTAATAAATTGCCAATAAACTAATAAATATGCAGAACGCATAACGTAATAACGTTTTTGCACGTAATGTAATCATTATTATTGATTATTACAATAtaaagtgtgtaaaaaaaaatctatattgtAATAACTTAATACAATACTGTAATAACATCCTAAAATCACTCTCTTATTTTAACGGAATGCATATTCGGTGTCACACACTTAAGGAACTGTTTGTATTTGCATCCATTGCCACAAAAGGGAGGGTGTAACTATTGCACTTCCATTCTGACCTTATAAACATCCAATGTCTTCAGAGAGAAAAAACAACTACACTCCTCAATTTGAAGACAAACCTTGCAGTCATGTGATTAGCAAAATTCTAATGATCACAAAACTATTCAACAGGAGTTTCACTCCTCCTTATCCCAGGATTGACCAGGCTACTTTGCCTTTCAGAGTAGAGATGGAACCAGACtcatgtcagacagacagacaaactcaCTGATTCactcacagacagactgactgactgactggctgactgactgactgattcactcactcactcactcactcactcactcactgactcactcactcactcacacataaccCATTGGACCAAGGCCAAAATCTGTGTTTTTTTGCACTACTTTAATGTATTTACCTTTACAGTCCCCTTATGAGCCACATATGGAAGTGTTACACATTTTTCTTTTTCAGGTCAACCAGTACAAGAAATGTTTTAATACAAAGTTACTCTCACAGCTTCATTTTACATGTTCTGGTAGATATGACatcattttgggactgtattatCTGCAATATCTAAGTGTGTCATGATTTAAATACCACAATCTGCCCGTTTGTTTATGTCTGTTGAGAAACATGAATATGAGCTCTCCAACATTAGCCCACTGGTTACATTCCCTTAGTAATATCAAATAACGACTCAGGAATGTGGTTTGGTGTGTAGTCAGCTATTACATGACACTTGATATGCGTGAAAAAGAGTGAATATAGAtttagtatttatttttaaagttGTTATTACATTATTGGTTAAAGTTATTACACTATTAATGAAAAAGCTTTTA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1007577 True 1403 lncRNA 0.35 1 38062852 38064254

Neighbor

gene id symbol gene type direction distance location
mtmr8 LOC106603315 coding downstream 97046 37958407 ~ 37965806 (-)
asb12a LOC106603316 coding downstream 114972 37945479 ~ 37947880 (-)
amer1 LOC106603317 coding downstream 119800 37939057 ~ 37943052 (-)
LOC110533826 LOC106603319 coding downstream 136800 37899074 ~ 37926052 (-)
LOC110533824 LOC106603320 coding downstream 194995 37843534 ~ 37867857 (-)
arhgap20b LOC106603313 coding upstream 1552 38065806 ~ 38112816 (-)
LOC110533836 LOC106603311 coding upstream 63172 38127426 ~ 38135731 (-)
LOC110533838 LOC106603309 coding upstream 180762 38245016 ~ 38280006 (-)
LOC110533841 LOC106603307 coding upstream 272153 38336407 ~ 38434401 (-)
LOC110533842 LOC106603306 coding upstream 480798 38545052 ~ 38617748 (-)
G885572 NA non-coding downstream 2387 38060184 ~ 38060465 (-)
G885569 NA non-coding downstream 5869 38056730 ~ 38056983 (-)
G885536 moes non-coding downstream 23184 38038109 ~ 38039668 (-)
G885533 NA non-coding downstream 61511 38001141 ~ 38001341 (-)
G885532 NA non-coding downstream 61944 38000596 ~ 38000908 (-)
G885761 NA non-coding upstream 52948 38117202 ~ 38175357 (-)
G885827 NA non-coding upstream 171164 38235418 ~ 38235774 (-)
G885840 NA non-coding upstream 228538 38292792 ~ 38293032 (-)
G885869 NA non-coding upstream 291059 38355313 ~ 38355512 (-)
G885903 NA non-coding upstream 333238 38397492 ~ 38397953 (-)
LOC110533823 LOC106603321 other downstream 359066 37518096 ~ 37704039 (-)
G884736 NA other downstream 743988 37316917 ~ 37318864 (-)
scn4bb LOC106603364 other downstream 1397495 36652707 ~ 36665717 (-)
G883754 NA other downstream 1670325 36391103 ~ 36392527 (-)
G883753 NA other downstream 1671938 36389997 ~ 36390914 (-)
G885767 NA other upstream 174696 38238950 ~ 38240559 (-)
rpl36a LOC106568029 other upstream 1119444 39183698 ~ 39185578 (-)
G887329 NA other upstream 1153059 39217313 ~ 39217738 (-)
ksr1a LOC106603285 other upstream 1790712 39843126 ~ 39893728 (-)
LOC110533878 LOC106603271 other upstream 2432460 40496714 ~ 40547393 (-)

Expression


Co-expression Network