G885924


Basic Information

Item Value
gene id G885924
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 38426945 ~ 38427173 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1008028
atcctacactgtttttttttctcattttgtctgtcatagttgaagtgatgatgaaaattacaggcctctctcatctttttaagtgggagaacttgcacaaatggtggctgactaaatacttttttgacccactgtatttgacaaataacatttgatttgatttggactgTCACAGAATagagcaaagagctgctgttttcatAAATGAGTTCATGTGTAAGTTTTATTC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1008028 True 229 lncRNA 0.34 1 38426945 38427173

Neighbor

gene id symbol gene type direction distance location
LOC110533840 LOC106603308 coding upstream 90656 38310821 ~ 38336289 (+)
LOC110533839 LOC106603310 coding upstream 140285 38280338 ~ 38286660 (+)
ar-beta ar-beta coding upstream 196707 38178704 ~ 38230238 (+)
LOC110533835 NA coding upstream 308958 38117154 ~ 38117987 (+)
LOC110533834 LOC106603406 coding upstream 363632 38059762 ~ 38063313 (+)
LOC110534919 NA coding downstream 306970 38734143 ~ 38743257 (+)
LOC110533845 LOC106603305 coding downstream 328270 38755443 ~ 38815017 (+)
LOC110533846 LOC106603304 coding downstream 402445 38829618 ~ 38891890 (+)
LOC110533847 LOC106603405 coding downstream 465798 38892971 ~ 38898218 (+)
LOC110533848 igbp1 coding downstream 475510 38902683 ~ 38908772 (+)
G885714 NA non-coding upstream 67919 38358824 ~ 38359026 (+)
G885712 NA non-coding upstream 70335 38356403 ~ 38356610 (+)
G885711 NA non-coding upstream 71303 38355441 ~ 38355642 (+)
G885710 NA non-coding upstream 72322 38354404 ~ 38354623 (+)
G885673 NA non-coding upstream 74127 38298889 ~ 38352818 (+)
G885964 NA non-coding downstream 18538 38445711 ~ 38446437 (+)
G885995 NA non-coding downstream 40155 38467328 ~ 38467576 (+)
G886002 NA non-coding downstream 42842 38470015 ~ 38470217 (+)
G886008 NA non-coding downstream 44554 38471727 ~ 38471934 (+)
G886018 NA non-coding downstream 52066 38479239 ~ 38479489 (+)
G883966 NA other upstream 1575792 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 1625360 36799376 ~ 36801589 (+)
G883473 om-i other upstream 2131398 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 2740372 35674201 ~ 35686573 (+)
G882624 NA other upstream 3010707 35414975 ~ 35416238 (+)
G889906 LOC106603262 other downstream 3285154 41712327 ~ 41717292 (+)
G890228 NA other downstream 3651042 42078215 ~ 42154093 (+)
G891133 NA other downstream 4555509 42982682 ~ 43109676 (+)
G891188 NA other downstream 4669547 43096720 ~ 43097617 (+)

Expression


Co-expression Network