G886008


Basic Information

Item Value
gene id G886008
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 38471727 ~ 38471934 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1008117
GTTTAtatgattgtgtttgtgtgccatgGTAAATTAAGGACTTATGGAACTATAATCataacacaaaacacacagcagAATAATCGTTTAACTCGCTTTGATCAAAGTGAGCTTGACCCAAAGTATTTTAGGCGTCCTCAATTAGAGAGTCTTGCACTGTAATTATTTTAGGGATACTTTTTAGTTTATGGAGCGCATCATCTACAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1008117 True 208 lncRNA 0.35 1 38471727 38471934

Neighbor

gene id symbol gene type direction distance location
LOC110533840 LOC106603308 coding upstream 135438 38310821 ~ 38336289 (+)
LOC110533839 LOC106603310 coding upstream 185067 38280338 ~ 38286660 (+)
ar-beta ar-beta coding upstream 241489 38178704 ~ 38230238 (+)
LOC110533835 NA coding upstream 353740 38117154 ~ 38117987 (+)
LOC110533834 LOC106603406 coding upstream 408414 38059762 ~ 38063313 (+)
LOC110534919 NA coding downstream 262209 38734143 ~ 38743257 (+)
LOC110533845 LOC106603305 coding downstream 283509 38755443 ~ 38815017 (+)
LOC110533846 LOC106603304 coding downstream 357684 38829618 ~ 38891890 (+)
LOC110533847 LOC106603405 coding downstream 421037 38892971 ~ 38898218 (+)
LOC110533848 igbp1 coding downstream 430749 38902683 ~ 38908772 (+)
G886002 NA non-coding upstream 1510 38470015 ~ 38470217 (+)
G885995 NA non-coding upstream 4151 38467328 ~ 38467576 (+)
G885964 NA non-coding upstream 25290 38445711 ~ 38446437 (+)
G885924 NA non-coding upstream 44554 38426945 ~ 38427173 (+)
G885714 NA non-coding upstream 112701 38358824 ~ 38359026 (+)
G886018 NA non-coding downstream 7305 38479239 ~ 38479489 (+)
G886026 NA non-coding downstream 11832 38483766 ~ 38483970 (+)
G886027 NA non-coding downstream 12400 38484334 ~ 38484567 (+)
G886032 NA non-coding downstream 16002 38487936 ~ 38488321 (+)
G886036 NA non-coding downstream 19212 38491146 ~ 38491360 (+)
G883966 NA other upstream 1620574 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 1670142 36799376 ~ 36801589 (+)
G883473 om-i other upstream 2176180 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 2785154 35674201 ~ 35686573 (+)
G882624 NA other upstream 3055489 35414975 ~ 35416238 (+)
G889906 LOC106603262 other downstream 3240393 41712327 ~ 41717292 (+)
G890228 NA other downstream 3606281 42078215 ~ 42154093 (+)
G891133 NA other downstream 4510748 42982682 ~ 43109676 (+)
G891188 NA other downstream 4624786 43096720 ~ 43097617 (+)

Expression


Co-expression Network