G886043


Basic Information

Item Value
gene id G886043
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 38495497 ~ 38495704 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1008153
GCATCACTCAATCATACCTGTCATCCACTTAAAAGCTTTGCAGGGGGCCTTCCCCACACTTGAATGCTTAGTGAAAACCAGTCTTCCCTTTGAAAAGACAAAAACACGACATCAGCCTCCTAATGATCCCGCTATTCCTGCTGCCTTATCTTCAGCAGGGTAATGACATTTCTGTTCACTTGATGTACACCACTTTTCATATGTGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1008153 True 208 lncRNA 0.45 1 38495497 38495704

Neighbor

gene id symbol gene type direction distance location
LOC110533840 LOC106603308 coding upstream 159208 38310821 ~ 38336289 (+)
LOC110533839 LOC106603310 coding upstream 208837 38280338 ~ 38286660 (+)
ar-beta ar-beta coding upstream 265259 38178704 ~ 38230238 (+)
LOC110533835 NA coding upstream 377510 38117154 ~ 38117987 (+)
LOC110533834 LOC106603406 coding upstream 432184 38059762 ~ 38063313 (+)
LOC110534919 NA coding downstream 238439 38734143 ~ 38743257 (+)
LOC110533845 LOC106603305 coding downstream 259739 38755443 ~ 38815017 (+)
LOC110533846 LOC106603304 coding downstream 333914 38829618 ~ 38891890 (+)
LOC110533847 LOC106603405 coding downstream 397267 38892971 ~ 38898218 (+)
LOC110533848 igbp1 coding downstream 406979 38902683 ~ 38908772 (+)
G886036 NA non-coding upstream 4137 38491146 ~ 38491360 (+)
G886032 NA non-coding upstream 7176 38487936 ~ 38488321 (+)
G886027 NA non-coding upstream 10930 38484334 ~ 38484567 (+)
G886026 NA non-coding upstream 11527 38483766 ~ 38483970 (+)
G886018 NA non-coding upstream 16008 38479239 ~ 38479489 (+)
G886254 NA non-coding downstream 139912 38635616 ~ 38635926 (+)
G886256 NA non-coding downstream 141154 38636858 ~ 38637078 (+)
G886277 NA non-coding downstream 153341 38649045 ~ 38649578 (+)
G886285 NA non-coding downstream 157834 38653538 ~ 38653895 (+)
G886323 NA non-coding downstream 182905 38678609 ~ 38678834 (+)
G883966 NA other upstream 1644344 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 1693912 36799376 ~ 36801589 (+)
G883473 om-i other upstream 2199950 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 2808924 35674201 ~ 35686573 (+)
G882624 NA other upstream 3079259 35414975 ~ 35416238 (+)
G889906 LOC106603262 other downstream 3216623 41712327 ~ 41717292 (+)
G890228 NA other downstream 3582511 42078215 ~ 42154093 (+)
G891133 NA other downstream 4486978 42982682 ~ 43109676 (+)
G891188 NA other downstream 4601016 43096720 ~ 43097617 (+)

Expression


Co-expression Network