G886341


Basic Information

Item Value
gene id G886341
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 38694349 ~ 38694864 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1008458
gccagtgactcagcccctgtaatagggttagaggcagagaatcccagtggaaagaggggaaccggccaggcagagacagcaagggtggttcgttgctccagagcctttccgttcaccctcccactcctgggccagactacactcaatcatatgacccactgaagagatgagtcttcagtagagacttaaaggttgagaccgagtttgcgtctctgacatgggtaggcagaccgttccataaaaatggagctctataggagaaagccctgcctccagctgtttgcttaaaaattctagggacaattagaaggcctgcgtcttgtgaccgtagcgtacgtgtaggtatgtacggcaggaccaaatcagagagatagataggagcaagcccatgtaatgctttgtaggttagcagtaaaaccttgaaatcagcccttgctttgacaggaagccagtgtagagaggctagcactggagtaatatgatcaaattttttggttctagtcaggattctagcag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1008458 True 516 lncRNA 0.49 1 38694349 38694864

Neighbor

gene id symbol gene type direction distance location
LOC110533840 LOC106603308 coding upstream 358060 38310821 ~ 38336289 (+)
LOC110533839 LOC106603310 coding upstream 407689 38280338 ~ 38286660 (+)
ar-beta ar-beta coding upstream 464111 38178704 ~ 38230238 (+)
LOC110533835 NA coding upstream 576362 38117154 ~ 38117987 (+)
LOC110533834 LOC106603406 coding upstream 631036 38059762 ~ 38063313 (+)
LOC110534919 NA coding downstream 39279 38734143 ~ 38743257 (+)
LOC110533845 LOC106603305 coding downstream 60579 38755443 ~ 38815017 (+)
LOC110533846 LOC106603304 coding downstream 134754 38829618 ~ 38891890 (+)
LOC110533847 LOC106603405 coding downstream 198107 38892971 ~ 38898218 (+)
LOC110533848 igbp1 coding downstream 207819 38902683 ~ 38908772 (+)
G886337 NA non-coding upstream 2774 38691298 ~ 38691575 (+)
G886324 NA non-coding upstream 14871 38679088 ~ 38679478 (+)
G886323 NA non-coding upstream 15515 38678609 ~ 38678834 (+)
G886285 NA non-coding upstream 40454 38653538 ~ 38653895 (+)
G886277 NA non-coding upstream 44771 38649045 ~ 38649578 (+)
G886345 NA non-coding downstream 5568 38700432 ~ 38700666 (+)
G886365 NA non-coding downstream 16022 38710886 ~ 38711094 (+)
G886378 NA non-coding downstream 23423 38718287 ~ 38718497 (+)
G886474 NA non-coding downstream 218651 38913515 ~ 38973414 (+)
G883966 NA other upstream 1843196 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 1892764 36799376 ~ 36801589 (+)
G883473 om-i other upstream 2398802 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 3007776 35674201 ~ 35686573 (+)
G882624 NA other upstream 3278111 35414975 ~ 35416238 (+)
G889906 LOC106603262 other downstream 3017463 41712327 ~ 41717292 (+)
G890228 NA other downstream 3383351 42078215 ~ 42154093 (+)
G891133 NA other downstream 4287818 42982682 ~ 43109676 (+)
G891188 NA other downstream 4401856 43096720 ~ 43097617 (+)

Expression


Co-expression Network