G886799 (cxb1)


Basic Information

Item Value
gene id G886799
gene name cxb1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 38917578 ~ 38919935 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1008954
TAAAAACCAGTGCAATTCAATATAAGAAGGCATGGTATACAACAAAACAGGGACTAAAATGCTATATATATTATGAAGTAAAAACTTTACAGTACCACAAATTCTAAACATCTATTATCCTTATACAGCAATGCTGTATATACTGGTAAGAAAAACAATGAGatagacatttaaacatgttctCTGATCATTCGGTTCTACCATCGTAACTTAAACTTTGAAAGTCAAGCACATTTTCTCATTCATTATCCATTCTATACTACTCTATACACTTGCATAATCAGTCTCATTCATAGAATTCAAAGCACCATTCAGATGTCTTGAAGCACCCACTTGATATTTCACTATGAAAGTGAGGTAGTTATTAGTGGTGCTTAGGAATGGCCTCTTAGTTATTAGTAATACTCCACTACAACCACCAGATGTTGGTTAAATTAACCACTTGGACAGTTTTCTTGGGTTAATATTTACAATGGACAATTGAACCCATACCCAGGCTTTGTCCTAAGCATGTCGCATTAAACAGGCTGTCAGGAATTAAATCATGATATAGAATAGATGATGAGATGGTTTAGTTGCTTGAATCTCGCAGAGCATAACGAAGACGGTATATTGAATTCAGCTGAATTTGAGGCGTTGCAAGTTAAGGGCACGTTAATAAATCAGTTTACCGTACTTTTATCGTACAGTCTCCTCTTCTGTCGAGCTTATGTCTTTATCCAAATTGATATTGTCCTTTTAAACACATCCATTTGAagtgtcatttcgacaagtatagAAAAAGTGTCGACACCTCATCATGGTGAAGTAAGCAGATTAATGAGTGTTGTTAAGGCCCTTTACCTTGAGCTTTGAGCATGTTATGTAACCAATTAGAGTTATACTGCCATGGTCCGTTTAGTTTGTTCTAGTATGAGCAGAGCTTTTGGGTGATCCATGCCCCCATGGTTGAGTCTCCAGCATTGCTTAAGTGCCTACCGCAAGCCTTCCCTGCCAGGAAGACGACCTCTGCGATGTTGAGCAGGATACAGATCCCTGACACAGCCAGCATGAACACAGTGAAGACAGTCTTCTCTGTGGGCCTGGACACAAAGCAGTCCACCGTGTTGGGGCAGGGGTACGAGTCACACTTGACTAGCCGGATCATCTTGTAGCCGGGGTAGATCATGTAGAAGAGATACATGAAGGTCACTTCGAAGATGATGCGGAAGAACAGGCTGATGATATATGTCCACCAGAGGGCACCTGTGATCTTCATCTTCTGGGTCTTGATCTGCTCCAGGTCCTTGGGGCTGGCCCGGCCAGACAGTTTATAGAGTTTCTTGTCGATGTGTCGGCGATGGGCAACGTGCATGGCCACCAGCAGGGCCGGGGTGGACACCAAGATGAGCTGCAGGGCCCACAGACGGATGTGTGAGATGGGGAAGAAGTGGTCATAACAGACGCTGTTGCAGCCGGGCTGCTGGGTATTACAAGTAAAGCCAGACTTCTCGTCGCCCCACACACTCTCTGCTGCAACCACCAGGACCAGGATGcggaagatgaagaggacagagagccAGATGCGACCGATGCCCGTGGAGTGTCTGTTTACACCGCTGATGACGGCATAAAAGGACGCCCAGTTCATTTTCGATTCCAGtcattcctGCCATGCCAGAAGAAGAGacttggagagatggagaggttaCCAAGCTCAATAGGAGGTGTAAGAGGCATAGGCGGCACCCAGGGTGGAGGACAACGTTGACCCGCCGGTGTAGCATGGACATTGATGTGCGTCCAGTGGAAAACCAAGCCTCTCTACCAGCCCTGACGTTGGTGTGCGGCTTAAGAGCGCAAGTCTTTGGTCTTGCACAAGACATCATGTGACCTTTTTTCCCAAAGGCACTGGCAAGGGTGTAACTGCCCCCATGTGACCATTGTGCCATGTTGACACTGGCACCAACCTGCATGGTATATCTGTTGCCTTCCCACAGCCAGA

Function

NR:

description
Gap junction beta-1 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1008954 True 1984 lncRNA 0.46 2 38917578 38919935

Neighbor

gene id symbol gene type direction distance location
LOC110533842 LOC106603306 coding downstream 299830 38545052 ~ 38617748 (-)
LOC110533841 LOC106603307 coding downstream 483177 38336407 ~ 38434401 (-)
LOC110533838 LOC106603309 coding downstream 637572 38245016 ~ 38280006 (-)
LOC110533836 LOC106603311 coding downstream 781847 38127426 ~ 38135731 (-)
arhgap20b LOC106603313 coding downstream 804762 38065806 ~ 38112816 (-)
LOC110533851 LOC106603302 coding upstream 8534 38928469 ~ 38945732 (-)
LOC110533854 LOC106603301 coding upstream 32673 38952608 ~ 38972062 (-)
LOC110533855 LOC106603300 coding upstream 64320 38984255 ~ 39000731 (-)
radx cssa04hxorf57 coding upstream 86399 39006334 ~ 39016120 (-)
LOC110533857 LOC106603298 coding upstream 104308 39024243 ~ 39096076 (-)
G886744 NA non-coding downstream 8816 38906460 ~ 38908762 (-)
G886764 NA non-coding downstream 36809 38858769 ~ 38880769 (-)
G886729 LOC106567779 non-coding downstream 102590 38811888 ~ 38814988 (-)
G886366 NA non-coding downstream 205938 38711401 ~ 38711640 (-)
G886342 NA non-coding downstream 222546 38694156 ~ 38695032 (-)
G886839 NA non-coding upstream 85251 39005186 ~ 39022000 (-)
G886892 NA non-coding upstream 209180 39129115 ~ 39129417 (-)
G886895 NA non-coding upstream 217799 39137734 ~ 39138012 (-)
G886929 NA non-coding upstream 267189 39187124 ~ 39187343 (-)
G886887 NA non-coding upstream 274160 39194095 ~ 39194480 (-)
G885767 NA other downstream 677019 38238950 ~ 38240559 (-)
LOC110533823 LOC106603321 other downstream 1213792 37518096 ~ 37704039 (-)
G884736 NA other downstream 1598714 37316917 ~ 37318864 (-)
scn4bb LOC106603364 other downstream 2252221 36652707 ~ 36665717 (-)
G883754 NA other downstream 2525051 36391103 ~ 36392527 (-)
rpl36a LOC106568029 other upstream 263763 39183698 ~ 39185578 (-)
G887329 NA other upstream 297378 39217313 ~ 39217738 (-)
ksr1a LOC106603285 other upstream 935031 39843126 ~ 39893728 (-)
LOC110533878 LOC106603271 other upstream 1576779 40496714 ~ 40547393 (-)
G890360 LOC106603260 other upstream 3062766 41982701 ~ 41984417 (-)

Expression


Co-expression Network