G887163


Basic Information

Item Value
gene id G887163
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 39507687 ~ 39508758 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1009345
ggaccattcctccatacagaatcttttcAGATTCTTGATACCCtttgtctgcgcttatggactgccctcttcaattcaaaccaaagGTTTTCAATGGAGTTAaagtctggagactgagatgaaaaatgttgattttgtggtcaattaatcTATGTGGATTactgatgtgtgcttggggttattgtcttgctggaagatccacttgcggccaggTGTCAGCCTCCTGGCAGCGGCAAACAggttttttggctaaaatgtcctggtacttgttAAAGTTCATGATGCTGTGACAAGTGGAAGCAAAACATCAAAACATCAAAGATGAACCACCACAGTTTACCATTGGTATGATCTACTCTCTGCATATGCTTCCGTTTTAGGGTTTAAAAAAGTGCacatatataacacacacacacatacaggactATACacacctccctcacacacacacacacacacacacacacacacacacaggactataCACACCtcccacacacacacacacacacacataggactATAcac

Function

NR:

description
putative transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1009345 True 528 lncRNA 0.43 2 39507687 39508758

Neighbor

gene id symbol gene type direction distance location
LOC110533863 LOC106603293 coding upstream 273475 39227030 ~ 39234212 (+)
LOC110533860 LOC106568029 coding upstream 322630 39157811 ~ 39185062 (+)
LOC110533859 LOC106603296 coding upstream 360003 39143458 ~ 39147684 (+)
LOC110533852 LOC106603303 coding upstream 579427 38922342 ~ 38928260 (+)
LOC110533849 cxb1 coding upstream 587574 38915893 ~ 38920113 (+)
LOC110533868 NA coding downstream 195760 39704518 ~ 39706579 (+)
LOC110533867 LOC106603289 coding downstream 198577 39707335 ~ 39710492 (+)
LOC118966774 NA coding downstream 278943 39787701 ~ 39789535 (+)
LOC110533109 LOC106603283 coding downstream 466412 39975170 ~ 39977790 (+)
LOC110533873 LOC106603279 coding downstream 474284 39983042 ~ 40090027 (+)
G887040 NA non-coding upstream 172911 39333941 ~ 39334776 (+)
G886965 NA non-coding upstream 289831 39217646 ~ 39217856 (+)
G886964 NA non-coding upstream 290070 39217395 ~ 39217617 (+)
G886961 NA non-coding upstream 294563 39212775 ~ 39213124 (+)
G886960 NA non-coding upstream 294983 39212448 ~ 39212704 (+)
G887248 NA non-coding downstream 128813 39637571 ~ 39637774 (+)
G887250 NA non-coding downstream 132367 39641125 ~ 39641335 (+)
G887274 NA non-coding downstream 162949 39671707 ~ 39676278 (+)
G887265 NA non-coding downstream 168959 39677717 ~ 39678447 (+)
G887275 LOC106603288 non-coding downstream 170171 39678929 ~ 39680772 (+)
LOC110533845 LOC106603305 other upstream 695548 38755443 ~ 38815017 (+)
G883966 NA other upstream 2656534 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 2706102 36799376 ~ 36801589 (+)
G883473 om-i other upstream 3212140 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 3821114 35674201 ~ 35686573 (+)
G889906 LOC106603262 other downstream 2203569 41712327 ~ 41717292 (+)
G890228 NA other downstream 2569457 42078215 ~ 42154093 (+)
G891133 NA other downstream 3473924 42982682 ~ 43109676 (+)
G891188 NA other downstream 3587962 43096720 ~ 43097617 (+)
G891741 NA other downstream 4025558 43534316 ~ 43600230 (+)

Expression


Co-expression Network