G887535


Basic Information

Item Value
gene id G887535
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 39600565 ~ 39601211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1009747
aacacgtcaaccctgttacccatagatagacaggctagaataacacatcaatcctgttacccatagatagacaggctagaataacacatcaaccctgttacccatagatagacaggctagaataacacatcaaccctgttacccatagatagacaggctagaataacacatcaaccctgttacccatagatagacaggctagaataacacgtcaaccctgttacccatagatagacaggctagaataacacgtcaaccctgttacccatagatagacaggctagaataacacatcaaccctgttacccatagatagacatgctagaataacacgtcaaccctgttacccatagatagacaggctagaataacacgtcaaccctgttacccatagatagacaggctagaaatgtgaATGTGAATATTGTGAACCTGGCATTCAATTGCCCCTTCCTGTTGCagacaacaagcttccattccccctgtcacaaggagATTTATGTCTAACTTAAGATAAAATCGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1009747 True 525 lncRNA 0.42 2 39600565 39601211

Neighbor

gene id symbol gene type direction distance location
LOC110533862 NA coding downstream 400644 39197965 ~ 39199921 (-)
rpl36a LOC106568029 coding downstream 414987 39183698 ~ 39185578 (-)
LOC110534920 LOC106603297 coding downstream 478727 39120154 ~ 39121838 (-)
LOC110533857 LOC106603298 coding downstream 504489 39024243 ~ 39096076 (-)
radx cssa04hxorf57 coding downstream 584445 39006334 ~ 39016120 (-)
LOC110533865 LOC106603290 coding upstream 40777 39641988 ~ 39671377 (-)
LOC110533866 LOC106603288 coding upstream 70362 39671573 ~ 39748431 (-)
LOC110533869 LOC106603287 coding upstream 170079 39771290 ~ 39775768 (-)
LOC110533108 LOC106603286 coding upstream 188666 39789877 ~ 39808636 (-)
LOC118966773 NA coding upstream 194565 39795348 ~ 39796606 (-)
G887529 NA non-coding downstream 12585 39581142 ~ 39587980 (-)
G887532 NA non-coding downstream 13443 39585291 ~ 39587122 (-)
G887530 NA non-coding downstream 13968 39583113 ~ 39586597 (-)
G887528 NA non-coding downstream 19773 39580026 ~ 39580792 (-)
G887416 NA non-coding downstream 238216 39359314 ~ 39362349 (-)
G887564 NA non-coding upstream 39588 39640799 ~ 39641246 (-)
G887563 NA non-coding upstream 40326 39641537 ~ 39641759 (-)
G887595 NA non-coding upstream 133656 39734867 ~ 39735143 (-)
G887596 NA non-coding upstream 134388 39735599 ~ 39735802 (-)
G887606 NA non-coding upstream 147847 39749058 ~ 39749338 (-)
G887329 NA other downstream 382827 39217313 ~ 39217738 (-)
G885767 NA other downstream 1360006 38238950 ~ 38240559 (-)
LOC110533823 LOC106603321 other downstream 1896779 37518096 ~ 37704039 (-)
G884736 NA other downstream 2281701 37316917 ~ 37318864 (-)
ksr1a LOC106603285 other upstream 253755 39843126 ~ 39893728 (-)
LOC110533878 LOC106603271 other upstream 895503 40496714 ~ 40547393 (-)
G890360 LOC106603260 other upstream 2381490 41982701 ~ 41984417 (-)
G890385 LOC100136012 other upstream 2386500 41987711 ~ 41989801 (-)
G890403 NA other upstream 2475530 42076741 ~ 42077947 (-)

Expression


Co-expression Network