G887754


Basic Information

Item Value
gene id G887754
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 40101515 ~ 40104101 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1009991
caaggctccgctgatagccaggtgtagcagtggtaaggattcactccatggtgctgaaaagaaagctctgctgttgggatagCTTTATGGCAAGGGCTGATTtgaaggttttactgctaacctacaaagcattacatgggcttgctcctacctctgATTTgttcctgccgtacatacctacacatacgctatggtcacaagatgcaggccgcCTAATTGTCCccagaatttctaagcaaacagctggaggcagggctttctcctatagagctccatttttatggaatagtctgcctacccatgtgagagacgcagactcggtctcaacctttaagtctttactgaagactcatctcttcagtgggtcatatgattgagtgtagtttggcccaggagtgtgaaggtgaacggaaaggctctggagcaacgaaccgcccttgctgtctggccggttcccctctctccactgggattctctgcctctaaccctattacaggggctgagtcattggcttactactggtgctctttcatgtcgtccctaggagggggtgtgtcacttgagtgggttgagtcactgacgtgatcttcctgtctgtgtTGGCGCCCCCCCAtttggttgtgccgtggcggagatctttgtgagcTAAACTtgaccttgtctcaggatggtaagttggtggttgaagatatccctctagtggtgtgggggctgtgctttggcaaagtgcaCCCTCAAcagggttatatccttcctgtttggccctgtctgggggtatcatcagatggggccacagtgtctcctgacccctcctctctcagcctctagtattaatgctgcagtaatttatgtgtcgggggctagggtcagtttgttatatctggagtacttctactgtcttatccggtgtcctgtgtgaatttaagtatgctctctctaattctctctttctctctctctctcggaggacctgaaccctaggaccatgcctcaggactacctggcatgacgactccttgctgtccaaagtccacctggccatgctgctgctccagtttcaactgttctgcctgcggctatgggaccctgacctgttcaccggacgtgctacctgtcccagacctgctgttttcaactctctagagacagcaggagcggtagagatactcttaatgatcggctatgaaaagccaactgacatttactcctgaggtgctgacttgctgcaccctcgattattattatttgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccactttgagatatcagctgatgtaagaagggctatataaatacatttgatttgatttgatttatgtagACCTTAACAGTTTGTGGACACCGTTTGTCACTGTTAAAGtgcaattattgtattttttgtgttgtgtagtggctttgctggcatgcatctaaacatttttgggggagtttgccccaccaagatttatatGCTGAAATCGCCACTGGACTGACCGTGTACAGGCAGCTCTCCACCACGGTTGGCTCTAGCTCCAGGCCCGGGAGGTAGTGGGACACAAACTGGGACAGGAGATGGACGTTCCGTCCTGCCTGTCTGTTGGTCCCTCTCGTTGGGCTCCGTCTCACTGCCCATGTGGTAGCATATCTGATGAACACAAGGACAATACCTCTACTGAAGCACAGAGACATTCTGAATCTCTCACCATTGAGGTTTATGACTTAATTACATGCGTTGGTTGGTTTGATATTCTAAAGTCTTATTAAGGGTAGAAAGTGGGGTTTGTCTAGCTAAATGCAATGCAATGTATCCTTAGGGATATACACACTACAAACAGAGTCCTCTGTGTATTCATTCCTCACAATAGGGATCTGATTACAGTGTGAAGGAATGCTACTTTTAGCCTATCCCCTCTACAGGACAGCAGTCATTTTGTCCAAGGAAATGGCACTCTAATAGTTGCTGCATTATTCAGTGTTAGTAGGTGATACTTTCCGTATCCAGGCAGTGTTCCTCACCTTCATCAGGCCTGGGTTGGACGGGTTGGACGGGAGTGGTACTGCGATTCCTCAACTCCCAACTGGACAAAGCAAGGGATGCGGCAGCTGATGTCATATGTGCCCGGAACATCCTCCTTCCAGTAGCACACAATGATGTTCACCACCTGGCAACGGCAGCACAGCACATAAGGGCAGACACATTTAACATACTTTCTTCAAAGGGAACGCACACTCCCTCCCGGTACAGATTCCTCTGGAGTTACCTGTGCTGTAGTTAgctggtgtttctatgttttgagggtgaaatttcaaccaaaGGGTTATGTCATCAcggtaaccaattttcaacatagacaaaccttgcaaaaaaatcagatcagatcagatcttCTACGTTATATCAACAATCAGAAACTATAGgttgggcagcacctcctactggagaattgatCTATCTACAGTTATCCGTTTGGTCTCCCAtgcagggttttaaccaagcccagcttTGATAATTGTCCCTGACTGCTTccaatgtgctatcgtgagaatgaTTATTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1009991 True 2587 lncRNA 0.47 1 40101515 40104101

Neighbor

gene id symbol gene type direction distance location
LOC110533873 LOC106603279 coding upstream 11488 39983042 ~ 40090027 (+)
LOC110533109 LOC106603283 coding upstream 123725 39975170 ~ 39977790 (+)
LOC118966774 NA coding upstream 311980 39787701 ~ 39789535 (+)
LOC110533867 LOC106603289 coding upstream 391023 39707335 ~ 39710492 (+)
LOC110533868 NA coding upstream 394936 39704518 ~ 39706579 (+)
LOC110533874 LOC106603277 coding downstream 47930 40152031 ~ 40360429 (+)
trnaa-ugc-41 NA coding downstream 121569 40225670 ~ 40225745 (+)
LOC110533875 LOC106603275 coding downstream 262095 40366196 ~ 40378922 (+)
LOC110533877 LOC106603276 coding downstream 287275 40391376 ~ 40393654 (+)
LOC110533880 LOC106603274 coding downstream 365918 40470019 ~ 40475795 (+)
G887756 NA non-coding upstream 1645 40096172 ~ 40099870 (+)
G887768 NA non-coding upstream 87384 40013355 ~ 40014131 (+)
G887740 NA non-coding upstream 135620 39965696 ~ 39965895 (+)
G887662 NA non-coding upstream 267346 39833936 ~ 39834169 (+)
G887755 NA non-coding downstream 703 40104804 ~ 40106488 (+)
G887787 NA non-coding downstream 4907 40109008 ~ 40109098 (+)
G887795 NA non-coding downstream 18662 40122763 ~ 40123036 (+)
G887819 NA non-coding downstream 64522 40168623 ~ 40305690 (+)
G887878 NA non-coding downstream 145796 40249897 ~ 40250293 (+)
LOC110533845 LOC106603305 other upstream 1289376 38755443 ~ 38815017 (+)
G883966 NA other upstream 3250362 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 3299930 36799376 ~ 36801589 (+)
G883473 om-i other upstream 3805968 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 4414942 35674201 ~ 35686573 (+)
G889906 LOC106603262 other downstream 1608226 41712327 ~ 41717292 (+)
G890228 NA other downstream 1974114 42078215 ~ 42154093 (+)
G891133 NA other downstream 2878581 42982682 ~ 43109676 (+)
G891188 NA other downstream 2992619 43096720 ~ 43097617 (+)
G891741 NA other downstream 3430215 43534316 ~ 43600230 (+)

Expression


Co-expression Network