G887878


Basic Information

Item Value
gene id G887878
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 40249897 ~ 40250293 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1010135
ttcttatttacaatttggCCTTCCAAAAGACAAAAGGcttcctgtggggacgggggttgggattaaaaatgtaaaatgaatcaaatataaatataggacaaaacactcaTCATGACaacagagacaacactacataaagagagacctaagacaacagcatagcatggcagcaacacatgacaacacagcatgttagcaccacaacataacaacaacATGCTAGCAACACAACAGgctagcagcacaaaacatggtacaaacattattgggcacagataaCAGCacaagggcaagaaggtagagacaacaaaacatcacacaaagcagccaatACTGTAAGTatgagtgtccatgattgagtctttgaatg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1010135 True 370 lncRNA 0.40 2 40249897 40250293

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-41 NA coding upstream 24152 40225670 ~ 40225745 (+)
LOC110533873 LOC106603279 coding upstream 159870 39983042 ~ 40090027 (+)
LOC110533109 LOC106603283 coding upstream 272107 39975170 ~ 39977790 (+)
LOC118966774 NA coding upstream 460362 39787701 ~ 39789535 (+)
LOC110533867 LOC106603289 coding upstream 539405 39707335 ~ 39710492 (+)
LOC110533875 LOC106603275 coding downstream 115903 40366196 ~ 40378922 (+)
LOC110533877 LOC106603276 coding downstream 141083 40391376 ~ 40393654 (+)
LOC110533880 LOC106603274 coding downstream 219726 40470019 ~ 40475795 (+)
aatf LOC106603273 coding downstream 229446 40479739 ~ 40495940 (+)
LOC110533884 LOC105010779 coding downstream 611058 40861351 ~ 40879099 (+)
G887795 NA non-coding upstream 126861 40122763 ~ 40123036 (+)
G887787 NA non-coding upstream 140799 40109008 ~ 40109098 (+)
G887755 NA non-coding upstream 143409 40104804 ~ 40106488 (+)
G887754 NA non-coding upstream 145796 40101515 ~ 40104101 (+)
G887756 NA non-coding upstream 150027 40096172 ~ 40099870 (+)
G887979 NA non-coding downstream 179747 40430040 ~ 40430261 (+)
G887978 NA non-coding downstream 246424 40496717 ~ 40498305 (+)
G888019 NA non-coding downstream 262150 40512443 ~ 40513908 (+)
G888021 NA non-coding downstream 263867 40514160 ~ 40547748 (+)
G888029 NA non-coding downstream 273207 40523500 ~ 40528316 (+)
LOC110533845 LOC106603305 other upstream 1437758 38755443 ~ 38815017 (+)
G883966 NA other upstream 3398744 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 3448312 36799376 ~ 36801589 (+)
G883473 om-i other upstream 3954350 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 4563324 35674201 ~ 35686573 (+)
G889906 LOC106603262 other downstream 1462034 41712327 ~ 41717292 (+)
G890228 NA other downstream 1827922 42078215 ~ 42154093 (+)
G891133 NA other downstream 2732389 42982682 ~ 43109676 (+)
G891188 NA other downstream 2846427 43096720 ~ 43097617 (+)
G891741 NA other downstream 3284023 43534316 ~ 43600230 (+)

Expression


Co-expression Network