G887978


Basic Information

Item Value
gene id G887978
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 40496717 ~ 40498305 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1010247
AAACCAGGTAAGTTGTATTTTATTAAATTTGAACTGAGGTAATTCGGGTTCACTACAGTAAACACATTAACCTTTCTCATTCAGCCAATCACCTCATTAGTAACAGGACTACCAGCAATAGACAAATATAACTTTGCACTGTGCATGAAGTCATCCTACATTGCAAAATCAATTTTTTACCTGACATTGAAACAAATATTATGTTAAATTTGAGGCTCTCCAGCAGCTAGGCCACCATCACTTTGCCATAAAGAAACTACAGTATCCAGGATCCATCACTGTTCCTCAATGAGCATAACCATGTTTACACAATACTATCATTTTCtgtgtcactagttaccacagccataaAGTCACAGTGGCTATATCGTAGCTTTTTGGTCTTTAAGGTTAGGCATGTGGTTAGCCATAATGACTTTTTGGCTGTGCTAACTAGTGACGACCCATTTTCTCCTTGGAAAATACGTCTCAAAATAAAGTAAACTACAATTTACAGAACATTTTAAAATCACACCTTTTGTAATACTGAATGTATAATTCTAGTGTACACTACTCAGTTCTCTTTAACATGATTGCCATTTAATAAATTAGTCACCTAAATGTTTTACATATTTTCTTACACAATAATTGTTAAAAAATATACCCCATGGGAGGGAAAAATGGAATTCTCAACCATTATGGCACCAATTACCATTAGTGTTTGCTTTTGTGTCAGTCTTTTAGTATACTATAGAACAGTAAGGTGCATTCAGaaaggtggtgacagctgctatTCTACCCGCATCAGTGTGCGCCTGCCTGCCCAATGGCTCACCCCAGGGCCAGTGTGGGGTGGTTGGGTCTGAATAGGGCCCTCTTCTTGGCTCCTGCTGGGCTCTTCTCTCCAGGCCCAGGGCAGAACGACACGCTATCCCCATCACAATGCCACGCTCCACCTCCTACCCTGGGTTTAATCAGTAATTAAGTGCGCCGTGCAAAGGTGTGCAAACCCTCCACCCTCGTGAACCCTCCCAGCAATCTGCTGCAATTTTATTGTCAAAATCGCCATCAAAACACTCAAACTCAATGCATGTTTTCCTGTCCAATAGGACAGAGGCTCATTATGATAGCAAATGAAGAGCTGCTTCCACCTTGGCCAATTGTGTGGTCCCCAAGCTTGTCGTCATTCATGCTAGTTATATAGTTTCTGGTCTTGGCTTTGTCTATCATTTTTGAACTTACATAGATATCACAACAAACACATTCTGTAAGACGTATAAATGCATTACCCTGTGTCTcagctctcccccctccctccaggaTCATTTTCATCTGTAACAGCACAGCCTCCGTTGGTTCCTCCAGCCTCAGCTTCTGGCACAGTTCCACTGCACCTGAGACAGTGGGGCAAGGCTGGGGAGAGGAGGCGCTCTAGGTGGCGGCCGGGGCGGCATCCATGGTGGACAGGATGCGGACCACCTCAGCACGCTGTGTAGGGGAGATGTGCTGCGTCATGTGCACAATGGAATCCATGGCAACCTCAGGGTTTG

Function

NR:

description
Im:7138837 protein, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1010247 True 1529 lncRNA 0.44 3 40496717 40498305

Neighbor

gene id symbol gene type direction distance location
aatf LOC106603273 coding upstream 777 40479739 ~ 40495940 (+)
LOC110533880 LOC106603274 coding upstream 20922 40470019 ~ 40475795 (+)
LOC110533877 LOC106603276 coding upstream 103063 40391376 ~ 40393654 (+)
LOC110533875 LOC106603275 coding upstream 117795 40366196 ~ 40378922 (+)
LOC110533874 LOC106603277 coding upstream 136288 40152031 ~ 40360429 (+)
LOC110533884 LOC105010779 coding downstream 363046 40861351 ~ 40879099 (+)
LOC110533885 LOC106603267 coding downstream 382805 40881110 ~ 40909990 (+)
LOC110533886 LOC106568122 coding downstream 411822 40910127 ~ 40917502 (+)
LOC110533887 LOC106603266 coding downstream 422264 40920569 ~ 40937315 (+)
LOC110533888 LOC106603264 coding downstream 531426 41029731 ~ 41240128 (+)
G887979 NA non-coding upstream 66456 40430040 ~ 40430261 (+)
G887819 NA non-coding upstream 191027 40168623 ~ 40305690 (+)
G887878 NA non-coding upstream 246424 40249897 ~ 40250293 (+)
G887795 NA non-coding upstream 373681 40122763 ~ 40123036 (+)
G887787 NA non-coding upstream 387619 40109008 ~ 40109098 (+)
G888019 NA non-coding downstream 14138 40512443 ~ 40513908 (+)
G888021 NA non-coding downstream 15855 40514160 ~ 40547748 (+)
G888029 NA non-coding downstream 25195 40523500 ~ 40528316 (+)
G888596 NA non-coding downstream 146064 40644369 ~ 40644587 (+)
G888636 NA non-coding downstream 199079 40697384 ~ 40697673 (+)
LOC110533845 LOC106603305 other upstream 1684578 38755443 ~ 38815017 (+)
G883966 NA other upstream 3645564 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 3695132 36799376 ~ 36801589 (+)
G883473 om-i other upstream 4201170 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 4810144 35674201 ~ 35686573 (+)
G889906 LOC106603262 other downstream 1214022 41712327 ~ 41717292 (+)
G890228 NA other downstream 1579910 42078215 ~ 42154093 (+)
G891133 NA other downstream 2484377 42982682 ~ 43109676 (+)
G891188 NA other downstream 2598415 43096720 ~ 43097617 (+)
G891741 NA other downstream 3036011 43534316 ~ 43600230 (+)

Expression


Co-expression Network