G888636


Basic Information

Item Value
gene id G888636
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 40697384 ~ 40697673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1010989
atggaaacccatctcatgaagctcccgaagaacagttattgtcttgatgttgcttccaaatgcagtttggaactcggtagtgagtgttgcaactgaggaaagatgatttttacacgctacacaCTTCagagtcctgttctgtgagcttgtgtggcctacctttttttacctttatttaactaggcaagtcaggaactgttcaggggcagaacggggatttgaacttgcaaccttccggttactagtccaatgctctaaccactaggctaccctgccgccccatatatata

Function

NR:

description
PREDICTED: transcription activator BRG1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1010989 True 290 lncRNA 0.45 1 40697384 40697673

Neighbor

gene id symbol gene type direction distance location
aatf LOC106603273 coding upstream 201444 40479739 ~ 40495940 (+)
LOC110533880 LOC106603274 coding upstream 221589 40470019 ~ 40475795 (+)
LOC110533877 LOC106603276 coding upstream 303730 40391376 ~ 40393654 (+)
LOC110533875 LOC106603275 coding upstream 318462 40366196 ~ 40378922 (+)
trnaa-ugc-41 NA coding upstream 471639 40225670 ~ 40225745 (+)
LOC110533884 LOC105010779 coding downstream 163678 40861351 ~ 40879099 (+)
LOC110533885 LOC106603267 coding downstream 183437 40881110 ~ 40909990 (+)
LOC110533886 LOC106568122 coding downstream 212454 40910127 ~ 40917502 (+)
LOC110533887 LOC106603266 coding downstream 222896 40920569 ~ 40937315 (+)
LOC110533888 LOC106603264 coding downstream 332058 41029731 ~ 41240128 (+)
G888596 NA non-coding upstream 52797 40644369 ~ 40644587 (+)
G888021 NA non-coding upstream 149636 40514160 ~ 40547748 (+)
G888029 NA non-coding upstream 169068 40523500 ~ 40528316 (+)
G888019 NA non-coding upstream 183476 40512443 ~ 40513908 (+)
G887978 NA non-coding upstream 199079 40496717 ~ 40498305 (+)
G888695 NA non-coding downstream 31031 40728704 ~ 40728963 (+)
G888698 NA non-coding downstream 33225 40730898 ~ 40731145 (+)
G888742 NA non-coding downstream 63176 40760849 ~ 40761130 (+)
G888755 NA non-coding downstream 80882 40778555 ~ 40778835 (+)
G888779 NA non-coding downstream 112423 40810096 ~ 40810491 (+)
LOC110533845 LOC106603305 other upstream 1885245 38755443 ~ 38815017 (+)
G883966 NA other upstream 3846231 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 3895799 36799376 ~ 36801589 (+)
G883473 om-i other upstream 4401837 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 5010811 35674201 ~ 35686573 (+)
G889906 LOC106603262 other downstream 1014654 41712327 ~ 41717292 (+)
G890228 NA other downstream 1380542 42078215 ~ 42154093 (+)
G891133 NA other downstream 2285009 42982682 ~ 43109676 (+)
G891188 NA other downstream 2399047 43096720 ~ 43097617 (+)
G891741 NA other downstream 2836643 43534316 ~ 43600230 (+)

Expression


Co-expression Network