G888742


Basic Information

Item Value
gene id G888742
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 40760849 ~ 40761130 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1011101
tgagggagagatgcacaccatgagggaagagagggacactgagggagagatacacaccatgagggaagagagggacactGAGTGAGAAATACACACAatgaaggaagagagggacactgagggagagatacacactatgagggaagagagggatgctgagggagagatacacaccatgaggaaagagagggacgctgagggagagatacacaccatgagggaagagagggagactgagggagagatgcacaccatgagggaagagagggacgcTGAGGGAGA

Function

NR:

description
PREDICTED: oxysterol-binding protein-related protein 3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1011101 True 282 lncRNA 0.53 1 40760849 40761130

Neighbor

gene id symbol gene type direction distance location
aatf LOC106603273 coding upstream 264909 40479739 ~ 40495940 (+)
LOC110533880 LOC106603274 coding upstream 285054 40470019 ~ 40475795 (+)
LOC110533877 LOC106603276 coding upstream 367195 40391376 ~ 40393654 (+)
LOC110533875 LOC106603275 coding upstream 381927 40366196 ~ 40378922 (+)
trnaa-ugc-41 NA coding upstream 535104 40225670 ~ 40225745 (+)
LOC110533884 LOC105010779 coding downstream 100221 40861351 ~ 40879099 (+)
LOC110533885 LOC106603267 coding downstream 119980 40881110 ~ 40909990 (+)
LOC110533886 LOC106568122 coding downstream 148997 40910127 ~ 40917502 (+)
LOC110533887 LOC106603266 coding downstream 159439 40920569 ~ 40937315 (+)
LOC110533888 LOC106603264 coding downstream 268601 41029731 ~ 41240128 (+)
G888698 NA non-coding upstream 29704 40730898 ~ 40731145 (+)
G888695 NA non-coding upstream 31886 40728704 ~ 40728963 (+)
G888636 NA non-coding upstream 63176 40697384 ~ 40697673 (+)
G888596 NA non-coding upstream 116262 40644369 ~ 40644587 (+)
G888021 NA non-coding upstream 213101 40514160 ~ 40547748 (+)
G888755 NA non-coding downstream 17425 40778555 ~ 40778835 (+)
G888779 NA non-coding downstream 48966 40810096 ~ 40810491 (+)
G888789 NA non-coding downstream 71091 40832221 ~ 40832487 (+)
G888821 NA non-coding downstream 181025 40942155 ~ 40942424 (+)
LOC110533845 LOC106603305 other upstream 1948710 38755443 ~ 38815017 (+)
G883966 NA other upstream 3909696 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 3959264 36799376 ~ 36801589 (+)
G883473 om-i other upstream 4465302 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 5074276 35674201 ~ 35686573 (+)
G889906 LOC106603262 other downstream 951197 41712327 ~ 41717292 (+)
G890228 NA other downstream 1317085 42078215 ~ 42154093 (+)
G891133 NA other downstream 2221552 42982682 ~ 43109676 (+)
G891188 NA other downstream 2335590 43096720 ~ 43097617 (+)
G891741 NA other downstream 2773186 43534316 ~ 43600230 (+)

Expression


Co-expression Network