G888821


Basic Information

Item Value
gene id G888821
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 40942155 ~ 40942424 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1011191
atcttttaccagatctaatgcgttatattctcctacattaatttcacatttccacaaactttaaagtgtttcctttcaaatggtatcaagaatatgcatatccttgcttcaggtcctgagctacaggcagttagatttgggtatgttattttaggCGAAAATGGAAAAAAAAGGTATGAGCCTTAAGATGTTTTTAAACGGAAACtccgccacttttcaacctcataatTATTCTCTtcagcaccaaaccagtgtctacatatgtgaaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1011191 True 270 lncRNA 0.35 1 40942155 40942424

Neighbor

gene id symbol gene type direction distance location
LOC110533887 LOC106603266 coding upstream 4840 40920569 ~ 40937315 (+)
LOC110533886 LOC106568122 coding upstream 24653 40910127 ~ 40917502 (+)
LOC110533885 LOC106603267 coding upstream 32165 40881110 ~ 40909990 (+)
LOC110533884 LOC105010779 coding upstream 63056 40861351 ~ 40879099 (+)
aatf LOC106603273 coding upstream 446215 40479739 ~ 40495940 (+)
LOC110533888 LOC106603264 coding downstream 87307 41029731 ~ 41240128 (+)
LOC118966775 NA coding downstream 459066 41401490 ~ 41404142 (+)
LOC110533893 LOC106603261 coding downstream 1011783 41954207 ~ 41966800 (+)
LOC110533894 LOC106603260 coding downstream 1036861 41979285 ~ 41985398 (+)
LOC110533895 LOC106603254 coding downstream 1051317 41993741 ~ 42004790 (+)
G888789 NA non-coding upstream 109668 40832221 ~ 40832487 (+)
G888779 NA non-coding upstream 131664 40810096 ~ 40810491 (+)
G888755 NA non-coding upstream 163320 40778555 ~ 40778835 (+)
G888742 NA non-coding upstream 181025 40760849 ~ 40761130 (+)
G888897 NA non-coding downstream 117567 41059991 ~ 41060228 (+)
G888904 NA non-coding downstream 127677 41070101 ~ 41070332 (+)
G888915 NA non-coding downstream 144452 41086876 ~ 41087249 (+)
G889805 NA non-coding downstream 691808 41634232 ~ 41634439 (+)
G889825 NA non-coding downstream 708744 41651168 ~ 41651372 (+)
LOC110533845 LOC106603305 other upstream 2130016 38755443 ~ 38815017 (+)
G883966 NA other upstream 4091002 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 4140570 36799376 ~ 36801589 (+)
G883473 om-i other upstream 4646608 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 5255582 35674201 ~ 35686573 (+)
G889906 LOC106603262 other downstream 769903 41712327 ~ 41717292 (+)
G890228 NA other downstream 1135791 42078215 ~ 42154093 (+)
G891133 NA other downstream 2040258 42982682 ~ 43109676 (+)
G891188 NA other downstream 2154296 43096720 ~ 43097617 (+)
G891741 NA other downstream 2591892 43534316 ~ 43600230 (+)

Expression


Co-expression Network